Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq10050 140 3e-28 seq11547 114 1e-20 >seq10050 Length=29434 Score = 140 bits (154), Expect = 3e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||||||| || || || || |||||||| || || || || Sbjct 22569 TAGTCCTGTGATGTGGGCGATCATGTATGTTAGAAGTGAATAGCTGGCAATATTGAAAGG 22510 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 ||| || ||||||||||| || || | ||| || |||||||| || ||||| || |||| Sbjct 22509 TACTCCCAGCCCCATGTCACCAGAGCGCTGATAAAGCTGACAGGACAGCTCACCATCGCA 22450 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||| || |||||||| | |||||||| || || ||||||||||| Sbjct 22449 CACATAGAACTGACAAAGAGCGTGGCATGGGGGCAGAGCCATGAG 22405 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| ||||||||||| || || || |||||||| || || || || || || ||||| Sbjct 22027 CATGTTTGTGTACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTC 21968 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 |||||| || | || || || | ||||||| || || | || || |||||||| Sbjct 21967 TCCCTCCTCTCGGTTAGTAAATCCATTGTTGTCCAGGAACTCACGAGAGCCATTGGCGTC 21908 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376 ||| ||||| ||||| || |||||||||||||| Sbjct 21907 CCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTG 21874 >seq11547 Length=21244 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || |||| ||| || |||||||| || | || | ||||| || || | || ||||| Sbjct 14641 CCTGTGATGTGGGCGATCATGTATGTTACAAGTGCATAGCTAGCAATACTGAAAGGTACT 14582 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 30064 || ||||||||||| || || | ||| | |||||||| || ||||| || |||||||| Sbjct 14581 CCCAGCCCCATGTCACCAGAGCGCTGATTAAGCTGACAGGACAGCTCACCATCGCTCACA 14522 Query 30065 TAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || |||||||| | || ||||| || || ||||||||||| Sbjct 14521 TAGAACTGACAAAGAGCCTGGCATGGGGGCAGAGCCATGAG 14481 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 30245 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30304 || || |||||||| || || || || || || ||||||||||| || | || || Sbjct 14257 AAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCTCAGTTAGTAAAT 14198 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 || | ||||||| ||||| | || || |||||||||| ||||| ||||| || || Sbjct 14197 CCACCATTGTCCAGGAAGTCACGAGAGCCACTGGCGTCCCAAATCTTCACCCCTTTTGCA 14138 Query 30365 GAGAGCTCTTTGG 30377 ||||||||||||| Sbjct 14137 GAGAGCTCTTTGG 14125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406079334068904