Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10050 114 1e-20 seq11547 105 6e-18 >seq10050 Length=29434 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 ||| | || || ||||| || ||||| |||||| | || || || ||||| || |||| Sbjct 22396 GATTTGCCGCTCATGGCTCTGCCCCCATGCCACGCTCTTTGTCAGTTCTATGTGTGCGA- 22454 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 ||| ||||||||||| ||||| ||||| || || || ||||||||| | || || || || Sbjct 22455 TGGTGAGCTGTCCTGTCAGCTTTATCAGCGCTCTGGTGACATGGGGCTGGGAGTACCTTT 22514 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| ||||| || || | || || || ||||||||||| || Sbjct 22515 CAATATTGCCAGCTATTCACTTCTAACATACATGATCGCCCA 22556 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || | || || ||||| ||||| || || || | |||| Sbjct 22556 TGGGCGATCATGTATGTTAGAAGTGAATAGCTGGCAATATTGAAAGGTACTCCCAGCCCC 22497 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| || || || ||||| ||||| ||||||||||| ||| |||| || ||||| || Sbjct 22496 ATGTCACCAGAGCGCTGATAAAGCTGACAGGACAGCTCACCA-TCGCACACATAGAACTG 22438 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||| ||||| || ||||| || || | ||| Sbjct 22437 ACAAAGAGCGTGGCATGGGGGCAGAGCCATGAGCGGCAAATC 22396 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34303 CAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCT 34362 ||| |||||||| | ||||||||||| |||||||| | || ||||| || || || Sbjct 21874 CAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGACGCCAATGGCTCTCGTGAGTTCCT 21933 Query 34363 GGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCA 34422 |||||| || || | || |||||||| ||| | || || ||||| || || || Sbjct 21934 GGACAACAATGGATTTACTAACCGAGAGGAGGGAGACCTTGGGCCTGTCTATGGCTTTCA 21993 Query 34423 GTGGAGACACTTTGGGGCGGAGTA 34446 |||||||||||||||||| ||||| Sbjct 21994 GTGGAGACACTTTGGGGCAGAGTA 22017 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| |||||||||||||||||||| || || ||||| || || | ||| |||||||| Sbjct 22017 TACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCT 21958 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | || || |||||||| || || ||||| || | |||||||| |||||| Sbjct 21957 CGGTTAGTAAATCCATTGTTGTCCAGGAACTCACGAGAGCCATTGGCGTCCCAAATCTTC 21898 Query 7019 ACCCCCCGGGACGAGAGCTCCTTG 7042 ||||| | |||||||| ||| Sbjct 21897 ACCCCTTTTGCAGAGAGCTCTTTG 21874 >seq11547 Length=21244 Score = 105 bits (116), Expect = 6e-18 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 ||| | || || ||||| || ||||| ||||| | || || || ||||| || |||| Sbjct 14472 GATTTGCCACTCATGGCTCTGCCCCCATGCCAGGCTCTTTGTCAGTTCTATGTGAGCGA- 14530 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 ||| ||||||||||| ||||| |||| || || || ||||||||| | || || || || Sbjct 14531 TGGTGAGCTGTCCTGTCAGCTTAATCAGCGCTCTGGTGACATGGGGCTGGGAGTACCTTT 14590 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || |||||||| || || || | || ||||||||||| || Sbjct 14591 CAGTATTGCTAGCTATGCACTTGTAACATACATGATCGCCCA 14632 Score = 105 bits (116), Expect = 6e-18 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || | || || || |||||||| |||| || || || | |||| Sbjct 14632 TGGGCGATCATGTATGTTACAAGTGCATAGCTAGCAATACTGAAAGGTACTCCCAGCCCC 14573 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| || || || |||| ||||| ||||||||||| ||| |||| || ||||| || Sbjct 14572 ATGTCACCAGAGCGCTGATTAAGCTGACAGGACAGCTCACCA-TCGCTCACATAGAACTG 14514 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | ||||| ||||| || ||||| || || | ||| Sbjct 14513 ACAAAGAGCCTGGCATGGGGGCAGAGCCATGAGTGGCAAATC 14472 Score = 93.3 bits (102), Expect = 4e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||||||||||| |||||||| || ||||| ||||| | Sbjct 14125 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGACGCCAGTGGCTCTCGTGACTTCC 14184 Query 34362 TGGACAA-GCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 ||||||| | || || | | || | |||||||| ||| | || || ||||| || || Sbjct 14185 TGGACAATGGTGGATTTACTAACT-GAGAGGAGGGAGACCTTGGGCCTGTCTATGGCTTT 14243 Query 34421 CAGTGGAGACACTTTGGGGC 34440 ||||||||||||||| |||| Sbjct 14244 CAGTGGAGACACTTTAGGGC 14263 Score = 93.3 bits (102), Expect = 4e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 |||| ||||||||||||||| || || ||||| || || | ||| |||||||| | || | Sbjct 14263 GCCCTAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCTC-AGTT 14205 Query 6965 GGGAACCCCCGC-TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | || || | |||||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 14204 AGTAAATCCACCATTGTCCAGGAAGTCACGAGAGCCACTGGCGTCCCAAATCTTCACCCC 14145 Query 7024 CCGGGACGAGAGCTCCTTGG 7043 | |||||||| |||| Sbjct 14144 TTTTGCAGAGAGCTCTTTGG 14125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448000939748640