Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq44130 140 8e-28 seq27510 138 3e-27 seq9418 89.7 1e-12 seq26604 86.0 1e-11 >seq44130 Length=14217 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| ||| | ||||| |||||||| || || | ||||| | |||||| Sbjct 11848 AGGACAAGGTGAAGGGTGAATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 11907 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| | ||||| || | || || || || |||| |||||||||||| Sbjct 11908 TCAAGCTGCTTGCCAACAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 11967 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| | | || ||||| || |||| | || |||| |||||||| ||| Sbjct 11968 TGAATCTTGGCTATAACATTTTCAGTGATGTCGCTGGGTTTGACCTGCAGAGTGATGGTC 12027 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | ||| || || Sbjct 12028 TTCCCAGTGAGGGTTTTCACAAAAATCTGTATGTT 12062 >seq27510 Length=34911 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| || |||||||| || |||||||| || || | || || | ||||| Sbjct 30150 TAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATC 30209 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| || ||||| || || || || || | || ||||||||||| | |||||||| || Sbjct 30210 TTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATC 30269 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| ||||||||||| || |||||| ||||| || | |||||| || Sbjct 30270 TTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGT 30329 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 30330 TTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 30365 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || || || ||||| || || | ||||| | |||||| Sbjct 29923 AGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCT 29982 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || || | || ||||||||||| | || || |||||| Sbjct 29983 TCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCCTCTTTGTCC 30042 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || || ||||||||| ||| || || | |||||| ||| Sbjct 30043 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGTTCCACTTCCAAAGTGATGGTC 30102 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 30103 TTCCCAGTCAGGGTCTTCACAAAAATTTGCAT 30134 >seq9418 Length=8239 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||| ||||||||||| ||||| || ||||||||||| | || |||||| Sbjct 3531 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 3590 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| |||||||||||||| || || | |||||| || Sbjct 3591 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCATGTT 3637 >seq26604 Length=24774 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||| ||||||| | || ||| ||||||||| |||||| Sbjct 19583 GGTAGAGGAGGACAGTCTGCTCTTCGTTTTGCTCGTCTGAGAATGGAAAAGAGACACAAC 19524 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG---TGTTTTATCAAAGACAACAAGTGT 139938 ||| |||| ||||| || || | ||| | ||| | | || ||| |||| |||| | Sbjct 19523 TACGTGAGGAAAGTGGCTGAAACGGCAGTGCAGCTCTTTGTTTCCAATGACA--AAGT-T 19467 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || |||| || || || || ||||| || | ||| | ||| Sbjct 19466 AATGTGGCAGGAATGGTCCTGGCTGGATCTGCTGACTTCAAAACTGAACTCAGCCAGTCT 19407 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 19406 GACATGTTTGATCC 19393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158458993007630