Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq27510 104 2e-17 seq44130 86.0 4e-12 >seq27510 Length=34911 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || ||||| ||||| || || ||||| |||||| | |||||||| | Sbjct 30365 AAAATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCG 30306 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || || || || || |||||| | || || || Sbjct 30305 AGTGACACAATTGAAAACGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCTGAC 30246 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| || || ||||| ||||| | |||||| | || ||| Sbjct 30245 CAGCAGAGGCTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGCACTCTCTCTGACTAC 30186 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || |||||||| | || || || || | || ||||||| Sbjct 30185 AACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTACGTCTGAGAGGAGG 30136 >seq44130 Length=14217 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || || |||||||| || ||||||||||| || || || |||||||| | || | || Sbjct 12062 AACATACAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGCAGGTCAAACCC 12003 Query 23668 ACGGACA-CTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| | | |||| ||| | | || ||| ||||| ||||| | || ||||| Sbjct 12002 AGCGACATCACTGAAAATGTTATAGC-CAAGATTCAGGACAAGGAAGGCATTCCCCCAGA 11944 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || |||| ||||| || || ||||| | ||||| | ||| || Sbjct 11943 TCAGCAGAGGCTGATCTTTGTTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTA 11884 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||| | ||| Sbjct 11883 CAACATCCAGAAAGAATTCAC 11863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337817376264296