Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014-
12-02] 46,662 sequences; 679,761,122 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq27510 113 1e-19
seq44130 104 6e-17
seq5292 104 6e-17
seq8206 84.2 5e-11
>seq27510
Length=34911
Score = 113 bits (124), Expect = 1e-19
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| ||||| || || |||| ||||| || | | ||| | ||||||
Sbjct 30151 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 30210
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
||||| ||||| ||||| || || || | || ||||| || || ||||||||||| |||
Sbjct 30211 TCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCT 30270
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||| || ||||| | || || || || ||||| ||
Sbjct 30271 TGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTT 30330
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || |||| || || | || | ||||||||
Sbjct 30331 TTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 30365
>seq44130
Length=14217
Score = 104 bits (114), Expect = 6e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
|||||||||||| || ||| ||||||| |||| ||||| |||| | || | |||||
Sbjct 11847 CAGGACAAGGTGAAGGGTGAATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 11906
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||| | ||||| || | || || || || ||||| |||||||||||
Sbjct 11907 TTCAAGCTGCTTGCCAACAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 11966
Query 225621 TTGGATCTTTTGCT-TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
|| ||| || ||| | ||| ||| || |||| || || || | | ||||| |
Sbjct 11967 CTGAATC-TTGGCTATAACATTTTCAGTGATGTCGCTGGGTTTGACCTGCAGAGTGATGG 12025
Query 225680 TCTTGCCCGTCAAAGTTTT 225698
|||| || || | |||||
Sbjct 12026 TCTTCCCAGTGAGGGTTTT 12044
>seq5292
Length=837
Score = 104 bits (114), Expect = 6e-17
Identities = 128/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615
|||| || || ||| | || || ||||| ||||| || || |||||| | || || ||
Sbjct 690 TTTATAATGTAATTGTAACAGCTCATGCTTTTGTAATAATCTTCTTTATAGTAATACCAA 631
Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675
||||||| || || || || || ||| | || || ||||| ||||| || ||||||||||
Sbjct 630 TTATGATTGGAGGATTTGGGAACTGACTAGTGCCCTTAATAATTGGAGCCCCTGATATGG 571
Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730
| || ||| | | ||||| ||||| || ||| | || || || || || ||||
Sbjct 570 CCTTCCCACGAATAAACAACATAAGCTTCTGACTCCTCCCACCATCTTTCCTTCT 516
>seq8206
Length=78778
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536
|| |||||||| || ||||| ||||| || |||||||||||||| |||||||| || ||
Sbjct 39494 TGTCCATCAGTGATGGAGATGACATTAGTGGGGATATAAGCAGACACATCACCGGCCTGG 39553
Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580
|| |||| ||||| | ||| || || || || || || || ||
Sbjct 39554 GTCTCGATCACAGGGAGGGCAGTGAGGGAGCCGCCTCCGAAGTT 39597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191818237023428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |