Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq27510 113 1e-19 seq44130 104 6e-17 seq5292 104 6e-17 seq8206 84.2 5e-11 >seq27510 Length=34911 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| ||||| || | | ||| | |||||| Sbjct 30151 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 30210 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| ||||| ||||| || || || | || ||||| || || ||||||||||| ||| Sbjct 30211 TCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCT 30270 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||| || ||||| | || || || || ||||| || Sbjct 30271 TGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTT 30330 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || |||| || || | || | |||||||| Sbjct 30331 TTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 30365 >seq44130 Length=14217 Score = 104 bits (114), Expect = 6e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||| || ||| ||||||| |||| ||||| |||| | || | ||||| Sbjct 11847 CAGGACAAGGTGAAGGGTGAATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 11906 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||| | ||||| || | || || || || ||||| ||||||||||| Sbjct 11907 TTCAAGCTGCTTGCCAACAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 11966 Query 225621 TTGGATCTTTTGCT-TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 || ||| || ||| | ||| ||| || |||| || || || | | ||||| | Sbjct 11967 CTGAATC-TTGGCTATAACATTTTCAGTGATGTCGCTGGGTTTGACCTGCAGAGTGATGG 12025 Query 225680 TCTTGCCCGTCAAAGTTTT 225698 |||| || || | ||||| Sbjct 12026 TCTTCCCAGTGAGGGTTTT 12044 >seq5292 Length=837 Score = 104 bits (114), Expect = 6e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || || ||| | || || ||||| ||||| || || |||||| | || || || Sbjct 690 TTTATAATGTAATTGTAACAGCTCATGCTTTTGTAATAATCTTCTTTATAGTAATACCAA 631 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 ||||||| || || || || || ||| | || || ||||| ||||| || |||||||||| Sbjct 630 TTATGATTGGAGGATTTGGGAACTGACTAGTGCCCTTAATAATTGGAGCCCCTGATATGG 571 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 | || ||| | | ||||| ||||| || ||| | || || || || || |||| Sbjct 570 CCTTCCCACGAATAAACAACATAAGCTTCTGACTCCTCCCACCATCTTTCCTTCT 516 >seq8206 Length=78778 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| || ||||| ||||| || |||||||||||||| |||||||| || || Sbjct 39494 TGTCCATCAGTGATGGAGATGACATTAGTGGGGATATAAGCAGACACATCACCGGCCTGG 39553 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 || |||| ||||| | ||| || || || || || || || || Sbjct 39554 GTCTCGATCACAGGGAGGGCAGTGAGGGAGCCGCCTCCGAAGTT 39597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191818237023428