Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq10050 122 7e-23 seq11547 102 7e-17 >seq10050 Length=29434 Score = 122 bits (134), Expect = 7e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| || || || || |||||||| || || || || Sbjct 22569 TAGTCCTGTGATGTGGGCGATCATGTATGTTAGAAGTGAATAGCTGGCAATATTGAAAGG 22510 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 || || ||||||||||| || || | ||| || ||||| || || ||||| || |||| Sbjct 22509 TACTCCCAGCCCCATGTCACCAGAGCGCTGATAAAGCTGACAGGACAGCTCACCATCGCA 22450 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||| || |||||||| | || ||||| || || || |||||||| Sbjct 22449 CACATAGAACTGACAAAGAGCGTGGCATGGGGGCAGAGCCATGAG 22405 >seq11547 Length=21244 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || |||| ||| || |||||||| || | || | ||||| || || | || || || Sbjct 14641 CCTGTGATGTGGGCGATCATGTATGTTACAAGTGCATAGCTAGCAATACTGAAAGGTACT 14582 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACG 29836 || ||||||||||| || || | ||| | ||||| || || ||||| || |||||||| Sbjct 14581 CCCAGCCCCATGTCACCAGAGCGCTGATTAAGCTGACAGGACAGCTCACCATCGCTCACA 14522 Query 29837 TAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || |||||||| | || ||||| || || || |||||||| Sbjct 14521 TAGAACTGACAAAGAGCCTGGCATGGGGGCAGAGCCATGAG 14481 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || |||||||| || || || || || || ||||||||||| || | || || Sbjct 14257 AAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCTCAGTTAGTAAAT 14198 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || | ||||||| ||||| | || || |||||||||| ||||| ||||| || | Sbjct 14197 CCACCATTGTCCAGGAAGTCACGAGAGCCACTGGCGTCCCAAATCTTCACCCCTTTTGCA 14138 Query 30137 GAGAGCTCTTTGG 30149 ||||||||||||| Sbjct 14137 GAGAGCTCTTTGG 14125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405932217780532