Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq10050 140 2e-28 seq11547 114 1e-20 >seq10050 Length=29434 Score = 140 bits (154), Expect = 2e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| || || || || |||||||| || || || || Sbjct 22569 TAGTCCTGTGATGTGGGCGATCATGTATGTTAGAAGTGAATAGCTGGCAATATTGAAAGG 22510 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 ||| || ||||||||||| || || | ||| || |||||||| || ||||| ||||||| Sbjct 22509 TACTCCCAGCCCCATGTCACCAGAGCGCTGATAAAGCTGACAGGACAGCTCACCATCGCA 22450 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || |||||||| | |||||||| || || ||||||||||| Sbjct 22449 CACATAGAACTGACAAAGAGCGTGGCATGGGGGCAGAGCCATGAG 22405 Score = 98.7 bits (108), Expect = 7e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| ||||||||||| || || || ||||| || || || || || || || ||||| Sbjct 22027 CATGTTTGTGTACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTC 21968 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||| || | || || || | ||||||| || || | || || |||||||| Sbjct 21967 TCCCTCCTCTCGGTTAGTAAATCCATTGTTGTCCAGGAACTCACGAGAGCCATTGGCGTC 21908 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 27642 ||| ||||| ||||| || | |||||||||||| Sbjct 21907 CCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTG 21874 >seq11547 Length=21244 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 || |||| ||| || |||||||| || | || | ||||| || || | || ||||| Sbjct 14641 CCTGTGATGTGGGCGATCATGTATGTTACAAGTGCATAGCTAGCAATACTGAAAGGTACT 14582 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACG 27330 || ||||||||||| || || | ||| | |||||||| || ||||| |||||||| || Sbjct 14581 CCCAGCCCCATGTCACCAGAGCGCTGATTAAGCTGACAGGACAGCTCACCATCGCTCACA 14522 Query 27331 TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || |||||||| | || ||||| || || ||||||||||| Sbjct 14521 TAGAACTGACAAAGAGCCTGGCATGGGGGCAGAGCCATGAG 14481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369297063795722