Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq27510 104 5e-17 >seq27510 Length=34911 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| || | | ||| | |||||||||| Sbjct 30156 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTA 30214 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || |||||||||||||| | | ||| |||||||| ||||| | Sbjct 30215 GTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCTTGGA 30274 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || || | || | |||| ||| ||| ||||| | ||| || |||| Sbjct 30275 TCTTGGCCTTCACGTTTTCAATTGTGTC---ACTCGGCTCAACTTCCAAAGTGATGGTTT 30331 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || ||||| || |||| ||||||||| Sbjct 30332 TACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 30365 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || || |||||||| || | | || | |||||||| | Sbjct 29928 CAAG-TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCTTCAA 29986 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || |||||||||||||| | | ||| || || || || || | Sbjct 29987 GCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCCTCTTTGTCCTGGA 30046 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| |||||| |||| | | |||| | || ||||| | ||| || || || | Sbjct 30047 TCTTTGCCTTGACATTCTCAATGGTGTCACTAGGTTCCACTTCCAAAGTGATGGTCTTCC 30106 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || |||||||| || | ||||| Sbjct 30107 CAGTCAGGGTCTTCACAAAAATTTGCAT 30134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153130980302202