Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq27510 127 5e-24 seq44130 111 4e-19 >seq27510 Length=34911 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || || || || || ||||| | || |||||| ||| Sbjct 30131 CAAATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTTTGGAAGTGGAACCTAGTGAC 30072 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||| ||||||||||| || |||||||| |||||||| Sbjct 30071 ACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAGCAG 30012 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || ||||| || || ||||| |||||||| | || || | || || ||| | Sbjct 30011 AGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCTGACTACAACATT 29952 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 29951 CAGAAGGAATCCACCCTCCA-CTTG 29928 >seq44130 Length=14217 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| ||||| || || || ||||| || |||| || | ||| Sbjct 12056 CAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGCAGGTCAAACCCAGCGAC 11997 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || | | |||||||||||||| ||||| || || || || ||||| Sbjct 11996 ATCACTGAAAATGTTATAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 11937 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| | || || ||||| |||||||| | || || |||| || ||| || Sbjct 11936 AGGCTGATCTTTGTTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 11877 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||||| || || || ||||| Sbjct 11876 CAGAAAGAATTCACCCTTCACCTTGT 11851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203011541026428