Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq20084 95.1 1e-14 seq19222 84.2 2e-11 >seq20084 Length=15297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 16220 AGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGT 16279 ||| | ||||| | |||||||||||||||||| ||||| | || ||||| |||||| Sbjct 12697 AGTACCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGT 12756 Query 16280 TTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCA 16339 ||||| | |||||| || || || || || || || ||||| || ||||| |||| ||| Sbjct 12757 TTCTTCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCA 12816 Query 16340 AAAGC 16344 || || Sbjct 12817 AAGGC 12821 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || || || || | |||||||| || ||||| |||||||| || || ||||| Sbjct 13119 ATATAGGTGTCGATGAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATTGCGATCTGG 13178 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||||||||||||| || ||||||| || Sbjct 13179 AATCCATAGAAGCAGCGCGCCTCCGTTA 13206 >seq19222 Length=928746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||| |||| | || |||||| || | || || Sbjct 773893 TCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTTTC 773834 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||| | || |||||||| || || || ||||| || ||||| |||| |||||| || Sbjct 773833 AGCCAATAAATGGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATGC 773775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511247806759200