Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq18889 646 1e-180 seq22773 118 1e-21 seq19222 114 2e-20 seq20084 96.9 4e-15 >seq18889 Length=1054283 Score = 646 bits (716), Expect = 1e-180 Identities = 1317/1949 (68%), Gaps = 29/1949 (1%) Strand=Plus/Plus Query 53085 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 53144 ||||||| ||||| || ||||| | | || |||| | | || ||||| || | Sbjct 963991 TATTCTTCATCTCCTCGTTCCACAGCCCCCGTTCAGTTAGGTCCTTCAGCAGATGTGGGT 964050 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | || | ||||| |||||||||| ||||| || ||||| || || ||||| || | || Sbjct 964051 TTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTT 964110 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | |||||||| || || | ||||| || || || || || |||||||| |||| || Sbjct 964111 CGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATAGGGGCCAACA 964170 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAA 53324 | | || || || | ||||| | | || || || || || | | ||| | ||| | Sbjct 964171 ACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA 964230 Query 53325 GATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATC 53384 | || | || || ||| ||||| || |||| | || | Sbjct 964231 GCTCAGTGGGCACCTTTTCCCACATGTCGTATTGCAGAATGCCCCTACTCACTGGGGAGC 964290 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || ||||| || || || || ||||| || || | || || || ||||| | ||| Sbjct 964291 CTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGCTTGCCTCCAGGGCAG 964350 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 | || || |||||||| ||||||| |||| || || ||||| || ||||||| Sbjct 964351 CATAGTAGATGGTTTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGAACTTTCAAATG 964410 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 ||||| | ||| || || || ||||| | || || ||||| || || || || || | Sbjct 964411 GATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCGATCCCAATTGGCCTGT 964470 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | || ||||| |||| || || || ||||| || || || |||| Sbjct 964471 GGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAATGTCAATGATCTTAT 964530 Query 53625 TGAGGTTTCTGACAATTACTTT---GACCA---CATCCTTCAGTTTGAGAAAATCAAATT 53678 |||| ||||| ||||||||||| ||| || ||| ||||| ||||||| Sbjct 964531 TGAGATTTCTTACAATTACTTTAGTGACTGAGGCAAGCTT---TTTGA---AATCAAAGG 964584 Query 53679 GTCCATCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCT 53735 | ||| | ||| ||||||| | ||||| || |||| ||||| |||||||| | Sbjct 964585 TGCGTTCTGGAGTAACATACATGTTGAGAGCAATTGAGGCCAAGTTACAGACGGCTACTT 964644 Query 53736 CAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793 ||| | || | | ||| | | ||||||||||| | ||||| || |||||||| || Sbjct 964645 CATCTTTGCTT--GTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATGGTGCC 964702 Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853 ||||| || || |||||||| ||||||| ||||| || || | ||| | || || || Sbjct 964703 CAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGTGTTCC 964762 Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT 53913 ||||| |||| || ||||| || || | ||| || ||||||| | | || Sbjct 964763 CGTTTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACCACCCGCTT 964822 Query 53914 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT 53973 ||| || ||| ||| |||| |||| |||||||| || |||||| | Sbjct 964823 CACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTC 964882 Query 53974 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 ||||| ||||| || ||| ||||||||||| ||||| || || | | ||||| Sbjct 964883 ATCCAACCCAGGGCACTCACTGGGACACATCAAAGACCAGTCCTGGTTGTTTTCCACTCT 964942 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCT 54092 ||||| || || ||||| ||||| || || ||| || || |||| | || || |||| Sbjct 964943 CTTCATGAACAGGTCAGGGATCCATAGGGC-ATAGAAGAGGTCTCGCGCCCTCTGCTCCT 965001 Query 54093 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 | || || || ||||| || || || || || | | | |||| | ||||| || |||| Sbjct 965002 CTTTACCAGTGTTCTTCTTCAGCTCAAGAAAGTCAAACACATCAAAGTGCCATGGCTCCA 965061 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 54212 |||| |||| | | || || ||||| || || || || || | || | || |||| Sbjct 965062 AGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACATAGCGTGCAGTGT 965121 Query 54213 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 54272 | || || ||||||| ||| || | || |||||| || |||||| || || | || | Sbjct 965122 TGTTGTACACTCTCAGCATCGGCACAAGACCATTTGAGTTACCATTTGTTCCAGCAATGT 965181 Query 54273 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 | ||||| | | | |||| |||| || || ||| ||||| ||||| |||||||| Sbjct 965182 AACTTCCTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGA 965241 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 | | || ||| |||| | || ||||| ||||| || || || |||||| ||||| | Sbjct 965242 TAAGAGCACATTGTTTCAGTGTGTCATAAATGCCATCAATGCTGTCATCCTTCATGGCCA 965301 Query 54393 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 | || || ||||| || | ||| | | |||| || || || || | || ||||| | Sbjct 965302 GCAGGAAGCAGCTGGAGAGCTGGGGTCTGTTAGTGCCTGCGTTGAACAGAGTGGGAGAGG 965361 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512 | || || ||||| || ||||| || || ||||| ||||| || |||| |||||||| Sbjct 965362 CATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCTATATCAG 965421 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | | || ||||| || || || | ||| | ||||||||| || | ||| | | || Sbjct 965422 AGTTGTGGATTCCGACAGCTACTCTCATGAGCATGTGCTGTGGGCGCTCAGCCACTTTAC 965481 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 || |||||||||||||| || || | |||||||| ||||| | ||||| |||| Sbjct 965482 CATTGATTTTCAGCAAGTAAGAGCGCTCTAGCGTTTTAAAGCCAAAGAAATTGTAAGAAA 965541 Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA--ACTACATC 54690 | || | || ||||| ||| | |||||||| || | | |||| | || | ||| Sbjct 965542 AATCCCTATCATAAATTATAGCAGAGTTGAGGCGGTC--TTTGTTTGCAAGGACAAGATC 965599 Query 54691 CATGGTAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTA 54748 | ||| ||| || || || || || || | |||| |||||||||||||| Sbjct 965600 TAGGGT--GTCTTGGGAGATCATGGGGGAGTGGCGCTTATTTAAAGGATTGACATAGTGG 965657 Query 54749 AATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACG 54808 || | ||||| ||| || ||||| || | || || || ||||| || |||||||| || Sbjct 965658 AACAGATCCTCCATGACGTCACTGAACACCTTCTTGGTCTCTTTATGGAGATTTGACACA 965717 Query 54809 GCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATT 54868 || |||| || || || ||||||||||| || || | || || ||||| || || Sbjct 965718 GCAATTCGTGCAGCCAGGATGGCATAATCTGGGTGCTTCGTGGTCAGTGTGGCAGCAATC 965777 Query 54869 TCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACC 54928 || || | || ||||||| || || || || ||||| | || | |||||||| ||| Sbjct 965778 TCTGCAGCAAGTGTGTCCAGCTCCACAGTGGTCACTCCGCTGTACAGACCTTGGATCACC 965837 Query 54929 TTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTA 54988 ||||| | |||| | || || | | || | || | |||||||| | || Sbjct 965838 TTCATCGTGATTTGTGTGGGGTCCACAAACTCCGCATTGAGCCCATAACAGAGCTTCTGG 965897 Query 54989 ATACGAGATGTGATTTTATCAAACATGAC 55017 || ||||| |||||||||||||||||||| Sbjct 965898 ATTCGAGAGGTGATTTTATCAAACATGAC 965926 >seq22773 Length=730387 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| || || ||||| || | ||||||||||||| || ||||| || ||| | | Sbjct 299790 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 299849 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||||||||| || || |||| | || |||| || || || || |||||||||| Sbjct 299850 AATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCAAATGGAT 299909 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 || | |||||| || ||||| || | || |||||||| || || |||||||| || | Sbjct 299910 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGTCTGTGGC 299969 Query 53568 TCTTATTAGA 53577 | | ||||| Sbjct 299970 GCATGTTAGA 299979 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| || ||||||||||| || || || |||||||||| |||| ||| || || || Sbjct 300299 TATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCCTAGATTCTGCTGGTTG 300358 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||||| | || || ||||| || || || ||| |||| ||||| || || |||| || Sbjct 300359 CTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGTGAC 300418 Query 53870 TCTATAATCGCTTTCCA 53886 || ||||| || | ||| Sbjct 300419 TCAATAATGGCATACCA 300435 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 ||| ||||||||||| ||||| || ||||| ||||| | ||| ||||| | || ||| || Sbjct 300723 CACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTG 300782 Query 54088 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||||| || || || || || |||||| || |||||| | | | |||| ||||||| | Sbjct 300783 CTCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATG 300841 Query 54147 GTTCCAAGTA 54156 | || | ||| Sbjct 300842 GCTCGAGGTA 300851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || || |||||||| | ||| || || || || | || || || | Sbjct 301996 CACTGAATACTTTCTTGGTCTCTTTGTGCAAATTGGACACAGCGATGCGTGCAGCGAGGA 302055 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||| || || || |||| || || || || || | || || | | |||||||| Sbjct 302056 TGGCGTAGTCAGGGTGTTTGGTGGTCAGTGTAGCAGCGGTCTCTGCAGCTAAAGTGTCCA 302115 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 |||| || || || |||||| | || | || ||||| |||||||||| |||| Sbjct 302116 ATTCCACAGTGGTCACTCCACTGTACAGCCCCTGGATCACCTTCATAGTGATTT 302169 >seq19222 Length=928746 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| |||||| | || || || |||||||| || | ||||| Sbjct 773895 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTT 773836 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||| | |||| ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 773835 TCAGCCAATAAATGGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 773776 Query 24277 CAATAAGTCTTTCTCC 24292 | | || |||||| || Sbjct 773775 CCACAATTCTTTCACC 773760 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| || ||||||||||| || ||||||| ||||| || ||||| |||||||||||| | Sbjct 772321 CACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGTCAGG 772262 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 || || || || || || |||||||| | ||||||| | ||| | ||| || Sbjct 772261 GTACTGTATGGGGAACATCACAAATCTTCTGGGATTTTCTTGAAGCAGTGGCTC 772208 >seq20084 Length=15297 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||| | || || | ||||||||| || || ||||||||||| ||||| || || | Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| || || |||||||| ||||| || || || || || ||||||| Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820 Query 24277 C 24277 | Sbjct 12821 C 12821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593528195188800