Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 107 2e-18
seq10742 102 7e-17
>seq4874
Length=535125
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||| || || || ||||| ||||| | ||||| || | || || ||||| |||||
Sbjct 502683 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 502624
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
|| | || || |||||||| || ||| | |||||||||||| |||||| |||
Sbjct 502623 GCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 502564
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | ||| |||| ||||||| |||| ||||||||||| || || | |||
Sbjct 502563 ACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGTCTTCCCAGTGAGGGTT 502504
Query 21159 TTGACAAATATTTGCAT 21175
|| ||||| || |||||
Sbjct 502503 TTCACAAAGATCTGCAT 502487
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | ||||| || || || ||||| ||||| | ||||| || | ||
Sbjct 502926 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 502867
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| ||||| ||| | || || |||||||| || ||| | ||||||||||||
Sbjct 502866 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502807
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || |||| ||||||| |||| || ||||||
Sbjct 502806 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502747
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || || | ||||| ||||| || |||||
Sbjct 502746 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715
Score = 102 bits (112), Expect = 7e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| || || || || ||||| ||||| | ||||| || | || || |||||||||||
Sbjct 501999 GTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCA 501940
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || || |||||||| || ||| | ||| ||||| || |||||| |||
Sbjct 501939 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATCTTGGATCTTGGCTTTA 501880
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | ||| || | ||||||| || | ||||||||| ||||| || | |||
Sbjct 501879 ACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATGGTTTTGCCAGTGAGGGTT 501820
Query 21159 TTGACAAATATTTGCATTTTG 21179
|| ||||| || ||||| |||
Sbjct 501819 TTCACAAAGATCTGCATATTG 501799
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | || || | ||| | || || || || || ||||| ||||| |
Sbjct 502257 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 502198
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | || || ||||| ||||| || | || || |||||||| || |||
Sbjct 502197 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502138
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| |||||| ||||| | | | || |||| |||||||
Sbjct 502137 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 502078
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || |||||||| || || | ||||| ||||| || |||||
Sbjct 502077 TCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | || || | ||| | || || || || || ||||| ||||| |
Sbjct 502485 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 502426
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | || || ||||| ||||| || | || || |||||||| || |||
Sbjct 502425 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502366
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| |||||| ||||| | | | || |||| |||||||
Sbjct 502365 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 502306
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || |||||||| || || | ||||| ||||| || |||||
Sbjct 502305 TCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259
>seq10742
Length=3397572
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | ||||||| || | ||||||||||| || ||||| ||||| |
Sbjct 2148905 CCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2148964
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | || || ||||| || || ||| |||| || ||||||||||| ||
Sbjct 2148965 AGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 2149024
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || |||||| ||||| | | | || |||| ||||| |
Sbjct 2149025 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 2149084
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|||| || ||||| || || || | || || ||||| || |||||||||
Sbjct 2149085 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTTG 2149135
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004
|||||| |||| || | ||||||| || | ||||| |||||||||||||| |||||
Sbjct 2148445 GTTTCCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTC 2148504
Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064
| ||||| | | || || ||||| || || || |||| || ||||| |||||
Sbjct 2148505 TGAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGG 2148564
Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124
|| | || || ||||| ||||||| || || | | | || |||| || ||
Sbjct 2148565 AGGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTC 2148624
Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
| |||| || |||||||| || || | || || ||||| || |||||
Sbjct 2148625 CACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422125087838960
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