Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4874 131 2e-25 seq10742 116 4e-21 seq20084 114 1e-20 seq19222 89.7 5e-13 >seq4874 Length=535125 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || |||||||| | || || || ||| Sbjct 502715 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502774 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 502775 GACACCATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502833 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | ||||||||| |||||||| Sbjct 502834 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAA 502893 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || ||||| ||| |||| ||||||| ||| Sbjct 502894 CATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGTGGC 502942 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| ||||| ||||||||||| ||| | || || || || Sbjct 501800 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATTACCCTTGAGGTGGAGCCC 501859 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | || | || || | || || |||||||| ||| | || Sbjct 501860 AGCGACACTATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAGGGCATTCCCCCCGAT 501919 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||||||||| || || | ||||||||| ||||||| Sbjct 501920 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTAC 501979 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| || | || || ||||| || |||| ||||||| || Sbjct 501980 AACATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 502029 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || |||||||| | || || || ||| Sbjct 502031 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502090 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 502091 GACACCATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502149 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 502150 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 502209 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || | || || ||||| || |||| |||| || || Sbjct 502210 CATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 502257 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || |||||||| | || || || ||| Sbjct 502259 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502318 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 502319 GACACCATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502377 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 502378 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 502437 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || | || || ||||| || |||| |||| || || Sbjct 502438 CATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 502485 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || ||||| || | || || || ||| Sbjct 502487 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGT 502546 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 502547 GACACTATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502605 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 502606 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 502665 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| || ||||| || |||| ||||||| || Sbjct 502666 CATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 502713 >seq10742 Length=3397572 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || |||||||| | || || ||| | | Sbjct 2148675 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAGT 2148616 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||| || | ||||||||||| ||||| | ||||| Sbjct 2148615 GACACCATTGAAAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCA 2148557 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || || | ||| || || ||||| || || | ||||||||| |||||||| Sbjct 2148556 ACAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAA 2148497 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| |||| || || | ||| |||| ||||| || || Sbjct 2148496 CATTCAAAAGGAATCCACCCTCCACTTGGTGCTGCGATTGAGAGGAGG 2148449 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || |||||||| | || || ||| | | Sbjct 2148903 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAGT 2148844 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | ||||||| ||||||||||| || || | || ||| Sbjct 2148843 GACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAAGAGGGTATTCCTCCTGATCAG 2148784 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 2148783 CAGAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 2148724 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || ||| | || |||| || || Sbjct 2148723 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGAGG 2148677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || || ||||||||||| | || || || | Sbjct 2149134 AAAATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCG 2149075 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | ||||| | |||| || || | || || || || ||||| | || Sbjct 2149074 AGTGACACAATTGAAAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGA 2149016 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || || | || || || ||||| || || | ||||| ||| ||||| Sbjct 2149015 CCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTA 2148956 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || ||| | || |||| || || Sbjct 2148955 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGAGG 2148905 >seq20084 Length=15297 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||||||||| || || || ||||| ||||||| || || |||||| Sbjct 12836 GGGGAGCGTGTGGTGGCCTTTGCTGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCC 12777 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||||| ||||| |||||||| ||||||||| |||||| || Sbjct 12776 GCCATTTTCTGGCTGAAGAAACGAGGCCTGATGCCCGGACTGACTTTCTCCAACGAACTT 12717 Query 117152 ATCTCCAGGGACGAGG 117167 ||| | | ||||||| Sbjct 12716 ATCAGCCGCGACGAGG 12701 Score = 107 bits (118), Expect = 2e-18 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| |||| ||| ||||| | Sbjct 13455 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 13397 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| || || |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 13396 TTCATTTCTCATGTTTTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 13337 Query 116804 GTC 116806 ||| Sbjct 13336 GTC 13334 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || || || || |||||||| ||||||| ||| Sbjct 13789 GAGCCTCTGCTGAAGGAGAACCCACGGCGCTTTGTCATCTTCCCCATTCAATACCACGAC 13730 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || ||| ||||||||| ||||||||||| || |||||||| | |||||||| Sbjct 13729 ATTTGGACCATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCAGAGGAGGT 13677 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| || ||||||||||| | |||||||| |||||||| || || || Sbjct 13235 GGTGGAGCGCTTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTATGGATTCCA 13176 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916 |||||| ||||||||| | ||||| || ||||| | || ||||||||||| || Sbjct 13175 GATCGCAATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTCATCGACACCTA 13122 >seq19222 Length=928746 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| | || || ||| | | || ||||| ||||||||||| ||||| ||| Sbjct 772208 GAGCCACTGCTTCAAGAAAATCCCAGAAGATTTGTGATGTTCCCCATACAGTACCCTGAC 772267 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| |||||||| |||| |||| || |||||||| || ||||||||| Sbjct 772268 ATCTGGAAAATGTACAAGCAGGCACAGGCATCCTTCTGGACAGTGGAGGAGGTG 772321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515051367345600