Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 131 2e-25
seq10742 116 4e-21
seq20084 114 1e-20
seq19222 89.7 5e-13
>seq4874
Length=535125
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| ||||| || || |||||||| | || || || |||
Sbjct 502715 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502774
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | ||||| | |||| || || | ||||| || ||||| ||| | || ||
Sbjct 502775 GACACCATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502833
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| || ||||| ||||| || || | ||||||||| ||||||||
Sbjct 502834 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAA 502893
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||| || |||| || ||||| ||| |||| ||||||| |||
Sbjct 502894 CATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGTGGC 502942
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || ||||| ||||| ||||||||||| ||| | || || || ||
Sbjct 501800 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATTACCCTTGAGGTGGAGCCC 501859
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| ||||| | | | | || | || || | || || |||||||| ||| | ||
Sbjct 501860 AGCGACACTATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAGGGCATTCCCCCCGAT 501919
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | || |||| || ||||||||||| || || | ||||||||| |||||||
Sbjct 501920 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTAC 501979
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||| || | || || ||||| || |||| ||||||| ||
Sbjct 501980 AACATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 502029
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| ||||| || || |||||||| | || || || |||
Sbjct 502031 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502090
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | ||||| | |||| || || | ||||| || ||||| ||| | || ||
Sbjct 502091 GACACCATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502149
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| ||| ||||| ||||| || || | ||||||||| |||||||||
Sbjct 502150 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 502209
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||| || | || || ||||| || |||| |||| || ||
Sbjct 502210 CATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 502257
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| ||||| || || |||||||| | || || || |||
Sbjct 502259 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502318
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | ||||| | |||| || || | ||||| || ||||| ||| | || ||
Sbjct 502319 GACACCATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502377
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| ||| ||||| ||||| || || | ||||||||| |||||||||
Sbjct 502378 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 502437
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||| || | || || ||||| || |||| |||| || ||
Sbjct 502438 CATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 502485
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| ||||| || || ||||| || | || || || |||
Sbjct 502487 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGT 502546
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | ||||| | |||| || || | ||||| || ||||| ||| | || ||
Sbjct 502547 GACACTATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 502605
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| ||| ||||| ||||| || || | ||||||||| |||||||||
Sbjct 502606 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 502665
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||| || |||| || ||||| || |||| ||||||| ||
Sbjct 502666 CATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 502713
>seq10742
Length=3397572
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || |||||||| | || || ||| | |
Sbjct 2148675 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAGT 2148616
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | ||||| |||||| ||| || | ||||||||||| ||||| | |||||
Sbjct 2148615 GACACCATTGAAAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCA 2148557
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| | || || | ||| || || ||||| || || | ||||||||| ||||||||
Sbjct 2148556 ACAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAA 2148497
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| || ||||| |||| || || | ||| |||| ||||| || ||
Sbjct 2148496 CATTCAAAAGGAATCCACCCTCCACTTGGTGCTGCGATTGAGAGGAGG 2148449
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || |||||||| | || || ||| | |
Sbjct 2148903 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAGT 2148844
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | || | ||||||| ||||||||||| || || | || |||
Sbjct 2148843 GACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAAGAGGGTATTCCTCCTGATCAG 2148784
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | ||| || || ||||| || || | ||||| ||| |||||||||
Sbjct 2148783 CAGAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 2148724
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| || || || ||| | || |||| || ||
Sbjct 2148723 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGAGG 2148677
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || || || || || || || || ||||||||||| | || || || |
Sbjct 2149134 AAAATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCG 2149075
Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | ||||| | |||| || || | || || || || ||||| | ||
Sbjct 2149074 AGTGACACAATTGAAAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGA 2149016
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | || || | || || || ||||| || || | ||||| ||| |||||
Sbjct 2149015 CCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTA 2148956
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| |||| || || || ||| | || |||| || ||
Sbjct 2148955 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGAGG 2148905
>seq20084
Length=15297
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| |||||||||| || || || ||||| ||||||| || || ||||||
Sbjct 12836 GGGGAGCGTGTGGTGGCCTTTGCTGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCC 12777
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
||||| || ||||| |||||||| ||||| |||||||| ||||||||| |||||| ||
Sbjct 12776 GCCATTTTCTGGCTGAAGAAACGAGGCCTGATGCCCGGACTGACTTTCTCCAACGAACTT 12717
Query 117152 ATCTCCAGGGACGAGG 117167
||| | | |||||||
Sbjct 12716 ATCAGCCGCGACGAGG 12701
Score = 107 bits (118), Expect = 2e-18
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743
|||||||||||||||| ||| | ||| |||||||| |||| ||| ||||| |
Sbjct 13455 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 13397
Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803
||||| || || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 13396 TTCATTTCTCATGTTTTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 13337
Query 116804 GTC 116806
|||
Sbjct 13336 GTC 13334
Score = 105 bits (116), Expect = 7e-18
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| |||||| |||||||| || || || || || |||||||| ||||||| |||
Sbjct 13789 GAGCCTCTGCTGAAGGAGAACCCACGGCGCTTTGTCATCTTCCCCATTCAATACCACGAC 13730
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688
|| ||| ||||||||| ||||||||||| || |||||||| | ||||||||
Sbjct 13729 ATTTGGACCATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCAGAGGAGGT 13677
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/116 (78%), Gaps = 4/116 (3%)
Strand=Plus/Minus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| ||| || ||||||||||| | |||||||| |||||||| || || ||
Sbjct 13235 GGTGGAGCGCTTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTATGGATTCCA 13176
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916
|||||| ||||||||| | ||||| || ||||| | || ||||||||||| ||
Sbjct 13175 GATCGCAATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTCATCGACACCTA 13122
>seq19222
Length=928746
Score = 89.7 bits (98), Expect = 5e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| ||||| | || || ||| | | || ||||| ||||||||||| ||||| |||
Sbjct 772208 GAGCCACTGCTTCAAGAAAATCCCAGAAGATTTGTGATGTTCCCCATACAGTACCCTGAC 772267
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| ||| |||||||| |||| |||| || |||||||| || |||||||||
Sbjct 772268 ATCTGGAAAATGTACAAGCAGGCACAGGCATCCTTCTGGACAGTGGAGGAGGTG 772321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515051367345600
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