Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4874 129 5e-25 seq10742 104 2e-17 seq18279 82.4 7e-11 >seq4874 Length=535125 Score = 129 bits (142), Expect = 5e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| ||||| || |||||||| ||| | ||||| ||| || | Sbjct 502010 CAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 501951 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| ||||| |||| || | |||||||||||| || ||||||||||| ||| | Sbjct 501950 GCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATCTTGGA 501891 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || |||||| | || | ||||| || ||| ||||| | ||| | ||||||| Sbjct 501890 TCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATGGTTTTGC 501831 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| ||||| |||||||| Sbjct 501830 CAGTGAGGGTTTTCACAAAGATCTGCAT 501803 >seq10742 Length=3397572 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | |||| || ||||||||||| || || || |||||||||||||| || Sbjct 2148449 CCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 2148508 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||| || ||||| || |||||| | || || | ||| || || ||||| Sbjct 2148509 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGG 2148568 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||| ||||| || ||| || || | ||| | |||||| | || ||| Sbjct 2148569 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCCACC 2148628 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || ||||| || || ||||| |||||||| Sbjct 2148629 TCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 >seq18279 Length=91511 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||| ||| || |||||| |||||| |||||||| || ||| ||| Sbjct 1810 CTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1869 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | |||||||||||||| ||||| || || Sbjct 1870 TCAGACGCTGCTGATCAGGAGGGATTCC 1897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433692612753520