Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10742 132 6e-26 seq1134 107 2e-18 seq18200 102 9e-17 seq666 102 9e-17 seq15175 100 3e-16 seq5960 100 3e-16 seq16312 98.7 1e-15 seq15988 98.7 1e-15 seq13196 98.7 1e-15 seq24754 95.1 1e-14 seq22663 95.1 1e-14 seq14478 95.1 1e-14 seq18712 91.5 2e-13 seq20355 86.0 7e-12 seq4874 84.2 3e-11 >seq10742 Length=3397572 Score = 132 bits (146), Expect = 6e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 42948 TCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 43007 ||||| | ||||||||| || |||| |||||| || | ||| ||||||||||| ||| Sbjct 2148440 TCCTAGTTTCCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTG 2148499 Query 43008 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 43067 || || | || || || | || || ||||||||||||||||| || || | ||| ||| Sbjct 2148500 TAGTCTGAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGG 2148559 Query 43068 TCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 43127 || | || | | ||| |||||| ||| ||| |||| | | | ||||| || Sbjct 2148560 TCAGGAGGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTA 2148619 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||| || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 2148620 GGTTCCACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | ||||| || | ||| |||||| || || ||||| |||| Sbjct 2148677 CCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2148736 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||||||||||||||||||| || || | |||||| || | || Sbjct 2148737 AGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGA 2148796 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||| | ||| |||| | ||| | || | | ||||| || | ||| || Sbjct 2148797 ATACCCTCTTTGT-CTTGAATTTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAAC 2148855 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 2148856 CTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||| | ||||| || | ||| |||||| || || ||||| |||| Sbjct 2148905 CCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2148964 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || ||||||||||||||||| || || || | ||||||||| | || Sbjct 2148965 AGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 2149024 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| ||| ||| || || | | | | ||||| |||| || || Sbjct 2149025 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 2149084 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | ||||||||||| || || || ||||| |||||||| |||||||| Sbjct 2149085 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 2149134 >seq1134 Length=200589 Score = 107 bits (118), Expect = 2e-18 Identities = 79/93 (85%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 60052 TTATGAAAAA-------TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 |||||||||| |||||||| || | ||||||||||||| ||||||||||||||| Sbjct 3386 TTATGAAAAAAAATTCTTTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGAC 3445 Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||| |||||||||||||||||| |||||| Sbjct 3446 AGGCGGGGATACTCACCACTATACTAACGAGGA 3478 >seq18200 Length=379000 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || || |||| |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 138030 ATAAAGAATTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 137971 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| |||||| Sbjct 137970 TACTCACCACTATACTAACGAGGA 137947 >seq666 Length=777973 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 693033 AAAGATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 693092 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 693093 TCACCACTATACTAACGAGGA 693113 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 695373 AAACATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 695432 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 695433 TCACCACTATACTAACGAGGA 695453 Score = 102 bits (112), Expect = 9e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||||| |||| || | |||||| |||||| ||||||||||||||||||||| |||||| Sbjct 697140 AAATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTC 697199 Query 60119 ACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 697200 ACCACTATACTAACGAGGA 697218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 689112 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 689171 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 689172 ACTATACTAACGAGGA 689187 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 692728 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 692787 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 692788 ATACTAACGAGGA 692800 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 699801 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 699860 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 699861 ACTATACTAACGAGGA 699876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct 687736 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 687795 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 687796 CTATACTAACGAGGA 687810 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 691179 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 691238 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 691239 TACTAACGAGGA 691250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 697416 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 697475 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 697476 TACTAACGAGGA 697487 >seq15175 Length=50825 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 20639 CTCCTCGTCAGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGGCCACTA 20580 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 20579 TACTAACGAGGACTG 20565 >seq5960 Length=102094 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 ||||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||| Sbjct 294 AATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 353 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 354 CCACTATACTAACGAGGA 371 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||| |||| |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 1915 AAAAGTTTTTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 1974 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| |||||| Sbjct 1975 TACTCACCACTATACTAACGAGGA 1998 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 |||| |||| || | |||||| |||||| ||||||||||||||||||||| ||||||| Sbjct 3803 AATTAACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 3862 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 3863 CCACTATACTAACGAGGA 3880 >seq16312 Length=416328 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26088 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26029 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 26028 TACTAACGAGGA 26017 >seq15988 Length=416377 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 125931 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 125872 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 125871 TACTAACGAGGA 125860 >seq13196 Length=56110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||||||| Sbjct 1078 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 1019 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 1018 CACTATACTAACGAGGA 1002 >seq24754 Length=191786 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 22163 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGGCCACTA 22104 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 22103 TACTAACGAGGACTG 22089 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||| ||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 22766 CTCCTCGTCGGGGAATCAAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGGCCACTA 22825 Query 60126 TACTACCGAGGATTG 60140 || || | |||| || Sbjct 22826 TATTAACAAGGACTG 22840 >seq22663 Length=211218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 188008 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGGCCACTA 187949 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 187948 TACTAACGAGGACTG 187934 >seq14478 Length=496152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| | ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 420240 AAAAATTGGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 420181 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 420180 CTTACCACTATACTAACGAGGA 420159 >seq18712 Length=531564 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| ||||| || ||||||||||||| ||||| |||||| Sbjct 65530 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCACGTGACAGGCGGAGATACTGGCCACTA 65471 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 65470 TACTAACGAGGACTG 65456 >seq20355 Length=24594 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||| |||| Sbjct 5462 GGGAATCTAACCCCGGTCTCCCGCGTGACAGACGGGGATACTCACCACTATACTAACGAG 5521 Query 60136 GA 60137 || Sbjct 5522 GA 5523 >seq4874 Length=535125 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| || | || || || | || || ||||| || ||||| || Sbjct 501993 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAG 501934 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | |||||| |||| || | || |||||| || ||| || ||| | || Sbjct 501933 ATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATCTTGGATCTTGGCTTTAACATTC 501874 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| | ||||| || | || ||||||||||| || || || || ||| Sbjct 501873 TCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACA 501814 Query 43173 AAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 501813 AAGATCTGCATATT 501800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571631330416800