Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18889 318 5e-82 seq22773 123 2e-23 seq4874 89.7 5e-13 >seq18889 Length=1054283 Score = 318 bits (352), Expect = 5e-82 Identities = 1016/1565 (65%), Gaps = 39/1565 (2%) Strand=Plus/Plus Query 22388 ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGA 22447 |||| | ||| || ||| |||||||||| || | || | || || | |||| Sbjct 963984 ATGAGCTTATTCTTCATCTCCTCGTTCCACAGCCCCCGTTCAGTTAGGTCCTTCAGCAGA 964043 Query 22448 TGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTG 22507 || |||| || | |||||||| || |||| ||| | |||| ||| |||||| ||| Sbjct 964044 TGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTGGTG 964103 Query 22508 AACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGC 22567 | | ||||| || |||||||| || ||||| || || || || || || ||||| || Sbjct 964104 TAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATAGGG 964163 Query 22568 GCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAG 22627 ||||||| || ||| |||| ||||| || | ||| || ||| |||| | |||| Sbjct 964164 GCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAG 964223 Query 22628 TCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687 ||||| || || | ||| || || |||||||| |||||||||| | ||| | |||| Sbjct 964224 TCCCAGAGCTCAGTGGGC---ACCTTTTCCCACATGTCGTATTGCAGAATGCCCCTACTC 964280 Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCC 22747 | ||| |||| ||| || || || || || | | | || | |||||||| ||| Sbjct 964281 ACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGCTTGCC 964340 Query 22748 TCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC--GGCGA 22805 |||| || | || || || || || ||||| || | | |||| || || ||| Sbjct 964341 TCCAGGGCAGCATAGTAGATGGTTTCAAAGAT---CTGGAT--ATTCAGCAGCTGGGCTT 964395 Query 22806 CG---CTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTA 22862 | ||||| | || |||||| | | ||| || || || | |||||| || || | Sbjct 964396 CAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCGA 964455 Query 22863 TACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCG 22922 | || || || | || | || || | ||| || || | || || | || Sbjct 964456 TCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAA 964515 Query 22923 AATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNT 22979 || || | | || | ||||| |||||| || || | | Sbjct 964516 TGTCAATGATCTTATTGAGATTTCTT---ACAATTACTTTAGTGACTGAGGCAAGCTTTT 964572 Query 22980 CAAAGTCGTAAACGCCCGAT-TGTAC-AACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037 || || ||| | || | || | |||| || |||||| || || ||||| | || Sbjct 964573 TGAAATC--AAAGGTGCGTTCTGGAGTAACATACATGTTGAGAGCAATTGAGGCCAAGTT 964630 Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097 || ||||| || || |||||| || ||||| ||||| || || || | || || || Sbjct 964631 ACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCA 964690 Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157 || || ||||||||||| |||||| || || | || || | ||| ||||| | ||| Sbjct 964691 TTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACAT 964750 Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT- 23216 ||| || || ||||| || ||| ||||| ||||| || ||||| |||||| | Sbjct 964751 GTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTT 964810 Query 23217 GAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGG 23276 || ||| ||| || || || | || || | ||||| | ||||| || Sbjct 964811 GACCACC-CGCTTCACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTCAAACTCCT 964869 Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336 | || |||| || ||| || || | | | |||||||| | | ||| || Sbjct 964870 CCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACATCAAAGACCAGTCCTGGT 964929 Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396 ||||| || | |||| || || || || |||||||| || ||||| || || || | Sbjct 964930 TGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGAGGTCTCGCG 964989 Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456 | | | ||||||||| || |||||||| |||| || | |||||| ||||| || | Sbjct 964990 CCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAAGTCAAACACATCAAAGT 965049 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 |||| ||||| | ||||| |||||| || ||||||| |||||||| || || || || | Sbjct 965050 GCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACAT 965109 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 | || || ||||||||||||||||| ||||||||||| ||||| || || || | Sbjct 965110 AGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACCATTTGAGTTACCATTTG 965169 Query 23577 CGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTC 23633 || || | ||| ||| ||| || || | ||| | ||| || |||| Sbjct 965170 TTCCAGCAATGTAACT---TCCTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTC 965226 Query 23634 CGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGT 23693 | | ||||| || || | || ||||||||||| ||||| || ||||| || ||||||| Sbjct 965227 CTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAATGCCATCAATGCTGT 965286 Query 23694 CCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGA 23753 | || || | || | || ||| || || | || | | || || | || || Sbjct 965287 CATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTTAGTGCCTGCGTTGA 965346 Query 23754 ACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCG 23809 |||| || || ||| || || || ||| ||| |||| || ||||| || || Sbjct 965347 ACAGAGTGGGAGAGGCATGAGTGAA----CCACTTCTCAGACAGCAGGTTGTAGGTCTCA 965402 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 ||||| ||||| || || ||| || |||| || || | ||| | ||||| || Sbjct 965403 ATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAGCATGTGCTGT 965462 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 || | ||| || || || ||||| | || || || || | | ||||||||| Sbjct 965463 GGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTAGCGTTTTAAAG 965522 Query 23930 CCAAA 23934 ||||| Sbjct 965523 CCAAA 965527 >seq22773 Length=730387 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||||||||| || ||||| ||||| | ||||| |||||||| | Sbjct 300719 TTTCCACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTC 300778 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || ||||| || || || || | || || ||||| || ||||| Sbjct 300779 TCTGCTCCTCTTTACCAGTGTTTTTCTTTAAGTCAAGGAACTCAAACACATCAAAATGCC 300838 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 | ||||||||||| || ||||| || || ||||||| Sbjct 300839 ATGGCTCGAGGTAGACTGCAAATGCCCCAGGTCTCT 300874 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| ||||| |||||||| || || || || ||||| |||| || ||| Sbjct 300281 ACCTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTG 300340 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | ||| ||||||||| || | |||||| | ||| |||||||||||||| || || Sbjct 300341 CCTAGATTCTGCTGGTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTA 300400 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||| ||| ||||| || || || ||||| Sbjct 300401 CCCGTCTCTGTCTGTGACTCAATAATGGCATACCACA 300437 >seq4874 Length=535125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || || || || || |||||||| || ||| | || || || || Sbjct 501800 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAAACCATTACCCTTGAGGTGGAGCCC 501859 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | || ||| | || || ||||| ||| | || ||||| Sbjct 501860 AGCGACACTATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAGGGCATTCCCCCCGAT 501919 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||||||| | ||||| || | ||| || Sbjct 501920 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTAC 501979 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| || || ||||| || || | |||||||| |||| Sbjct 501980 AACATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGTA 502031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445621191595200