Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18889 650 0.0 seq22773 127 3e-24 seq20084 102 1e-16 seq19222 89.7 6e-13 >seq18889 Length=1054283 Score = 650 bits (720), Expect = 0.0 Identities = 1336/1978 (68%), Gaps = 29/1978 (1%) Strand=Plus/Plus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||| ||||||||| | | || | | ||||||| ||||| || ||||| | | Sbjct 963962 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 964021 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 || |||| | | || ||||| ||||| || | || || |||||||||| ||||| Sbjct 964022 TTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCT 964081 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 964082 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGC 964141 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || |||||||| |||| ||| | || || || | ||||| | | || Sbjct 964142 TGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAAT 964201 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATA 62593 || || || || | | ||| | ||| || || | || || || Sbjct 964202 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGTA 964261 Query 62594 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTC 62653 ||| ||||| || |||| | || ||| ||||| ||||| || || ||||| || Sbjct 964262 TTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTC 964321 Query 62654 AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713 || | | || || ||||| | ||| | || || |||||||||||||||| |||| Sbjct 964322 TGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATT 964381 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || || ||||| | || |||||||||||| | ||| || || || || || | Sbjct 964382 CAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 964441 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 || || ||||| || || || || || || | ||| || || | || ||||| |||| Sbjct 964442 ACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 964501 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 62889 || || || ||||| || || || |||||||||||||| ||||||||||| ||| Sbjct 964502 TGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGA 964561 Query 62890 --CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGC 62944 || ||| ||||| ||||||| | ||| | ||| ||||||| | || Sbjct 964562 GGCAAGCTT---TTTGA---AATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAGC 964615 Query 62945 AACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 63002 || || |||| ||||| |||||||| |||| | || | | ||| | | |||||| Sbjct 964616 AATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT--GTATACTCCACAATCTCA 964673 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | ||||| || ||||| || || ||||| || || |||||||| ||||||| Sbjct 964674 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 964733 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 ||||| || || | ||| | || || || ||||| ||||||| ||||| || || | | Sbjct 964734 GCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATAC 964793 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATAC 63182 || || ||||||| | | || ||| | || ||| ||| | || ||| Sbjct 964794 CACACCTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTAC 964853 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | || ||||| || |||||| | ||||| | ||| || ||| ||||||||| Sbjct 964854 AGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACATC 964913 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 || ||||| || || | | ||||| ||||| || || ||||| ||||| || || Sbjct 964914 AAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGC- 964972 Query 63303 ATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 ||| || || |||| | || || ||||| || || || ||||| || || || || || Sbjct 964973 ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAA 965032 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | |||| | ||||| || |||||||| ||||| | | || || ||||| || Sbjct 965033 GTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATT 965092 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || || || || | || | || ||||| || || ||||||| ||| || | || ||| Sbjct 965093 GCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACC 965152 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||||| ||||||| || || | || || | ||| | | | |||| |||| || Sbjct 965153 ATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTGC 965212 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || || ||||| ||||||||| | || ||| |||| | |||||||| || Sbjct 965213 TACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAAT 965272 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 ||| || ||||| ||||| ||||| || || || ||||| || | ||| | | | Sbjct 965273 GCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTT 965332 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || || || || | || ||||| || || || ||||| || ||||| || || || Sbjct 965333 AGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTT 965392 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| |||||||| |||| |||||||| | | || ||||| || || || | ||| | Sbjct 965393 GTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAG 965452 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| || | ||| | | ||| || ||||||| |||||| || || | Sbjct 965453 CATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTAG 965512 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 |||||||| ||||| | ||||| ||||| || | || ||||| ||| | || ||||| Sbjct 965513 CGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGAG 965572 Query 63902 CTTATCCTTATATTTGTTA--ACTATATCCATGGTAATACTT--GAAATAATCGGAGAAT 63957 || | | |||| | || | ||| | ||| ||| || || || || || | Sbjct 965573 GCGGTC--TTTGTTTGCAAGGACAAGATCTAGGGT--GTCTTGGGAGATCATGGGGGAGT 965628 Query 63958 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 64017 | | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | | Sbjct 965629 GGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACGTCACTGAACACCT 965688 Query 64018 tttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64077 | || || || || || |||||||| | || |||| || || || ||||||||||| | Sbjct 965689 TCTTGGTCTCTTTATGGAGATTTGACACAGCAATTCGTGCAGCCAGGATGGCATAATCTG 965748 Query 64078 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 64137 | || | || || ||||| || || || || || || ||||||| || || || | Sbjct 965749 GGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAGCTCCACAGTGG 965808 Query 64138 TTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 64197 | ||||| | || | ||||| || |||||||| | |||| | || || | | | Sbjct 965809 TCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAACT 965868 Query 64198 CCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 ||| || | ||||| || | || || ||||| |||||||||||||||||||| Sbjct 965869 CCGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 965926 >seq22773 Length=730387 Score = 127 bits (140), Expect = 3e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| ||||| ||||| || | ||||||||| ||| || ||||| || ||| | | Sbjct 299790 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 299849 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| ||||| |||| | || |||| || || || || |||||||||| Sbjct 299850 AATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCAAATGGAT 299909 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 || | |||||| || |||||||| | || |||||||| || || |||||||| || | Sbjct 299910 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGTCTGTGGC 299969 Query 62806 TCTTATTAGA 62815 | | ||||| Sbjct 299970 GCATGTTAGA 299979 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || ||||||||||| || || || ||||||| || |||| ||| || || || Sbjct 300299 TATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCCTAGATTCTGCTGGTTG 300358 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| | || || ||||| || || || ||| |||| ||||| || || |||| || Sbjct 300359 CTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGTGAC 300418 Query 63108 TCTATAATCGCTTTCCA 63124 || ||||| || | ||| Sbjct 300419 TCAATAATGGCATACCA 300435 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 ||| ||||||||||| ||||| || ||||| ||||| | ||| ||||| | | ||| || Sbjct 300723 CACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTG 300782 Query 63326 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63384 ||||| || || || || || |||||| || |||||| | | | |||| ||||||| | Sbjct 300783 CTCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATG 300841 Query 63385 GTTCCAAGTA 63394 | || | ||| Sbjct 300842 GCTCGAGGTA 300851 >seq20084 Length=15297 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| | || || | |||||| || || || ||||||||||| ||||| || || | Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||||| ||||| || |||||||| || || || |||||||||| Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820 Query 33724 C 33724 | Sbjct 12821 C 12821 >seq19222 Length=928746 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| || ||||||||||| || ||||||| ||||| || ||||| |||||||||||| | Sbjct 772321 CACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGTCAGG 772262 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || || || ||||| || |||||||| | |||||| Sbjct 772261 GTACTGTATGGGGAACATCACAAATCTTCTGGGATTT 772225 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 |||||||| |||||||| ||||||| || || ||| |||| ||||||||||| |||| Sbjct 773673 GCTGTCATTTATCCACTGAAGAGCCCAGTCCGCTTTCCTTTTCACACAAGGCATGGTTTG 773614 Query 33809 TATGGCATTAAAGAGATAGT 33828 ||||||||||| | ||||| Sbjct 773613 AATGGCATTAAATAAATAGT 773594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629612436916800