Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 311 8e-80
seq19222 104 2e-17
seq20084 91.5 1e-13
>seq18889
Length=1054283
Score = 311 bits (344), Expect = 8e-80
Identities = 995/1532 (65%), Gaps = 11/1532 (1%)
Strand=Plus/Plus
Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168
|||| || ||| || ||||| ||||||| |||||| |||||||| | ||||| | ||
Sbjct 964027 TTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTG 964086
Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228
| || || ||||| || || | ||| ||||||||||| || | | |||||| | ||| |
Sbjct 964087 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGG 964146
Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288
| || || ||||| || || | | ||||| || |||| || ||| || ||| |||
Sbjct 964147 AGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCT 964206
Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTA 37348
|| || ||||| ||||| | || || || |||| |||||| || ||||| |
Sbjct 964207 CCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGTATTGCA 964266
Query 37349 GAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTA 37408
|||| || ||||| |||| || | |||||||||||||| |||| ||| || |
Sbjct 964267 GAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCA 964326
Query 37409 GTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATA 37468
||||| || | || || || ||||| || || ||||| || || || ||||| | |
Sbjct 964327 ACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCAGCA 964386
Query 37469 TTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCT 37528
| ||||| || || |||| ||| | || | || || |||| || | |||||
Sbjct 964387 GCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCT 964446
Query 37529 GAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGAT 37588
| |||||||| || || || || || ||| || || | | ||| ||||| |
Sbjct 964447 GCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGT 964506
Query 37589 AATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCA 37648
| || || || || || || ||||| |||||| | || | || ||| || | | |
Sbjct 964507 AGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGAGGCAA 964566
Query 37649 ACTTGTCGAA--CATAAATACGTTAT-TATTAACAAATTTACTCAACGAAATAGATCCTA 37705
||| | ||| || | | |||| | | ||||| | | | | | ||| || | |
Sbjct 964567 GCTTTTTGAAATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAGCAATTGAGGCCA 964626
Query 37706 GATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTAC 37765
||||| || || |||||||||| | | || | | | |||||| || || | ||||
Sbjct 964627 AGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTAC 964686
Query 37766 TCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATA 37825
| || | || || |||||||| || || || | ||||| | |||||| || |
Sbjct 964687 TGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACA 964746
Query 37826 GTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-T 37884
|| || || ||||| |||| | |||| ||| || || | | ||| | || ||
Sbjct 964747 ACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCA-CACCTGCTGA 964805
Query 37885 GCTTTAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAA 37944
|| || || | | || | | | || ||| ||| | | || | || | |||
Sbjct 964806 GCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTCAAAC 964865
Query 37945 TCATTCCCCCATACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATT 38002
|| | |||||| ||| | ||| || || || || || | |||||||| | |||||| |
Sbjct 964866 TCCTCCCCCCA-ACA-CTCATCCAACCCAGGGCACTCACTGGGACACATCAAAGACCAGT 964923
Query 38003 CTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAAT 38062
| | | ||||| || | | ||| || | ||||| | ||||| ||| || | |
Sbjct 964924 CCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGAGGT 964983
Query 38063 CTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATA 38121
|| | || | || || || || ||| ||||| |||| ||||| || || | |
Sbjct 964984 CTCGCGCCCTCTGCTCCTCTTTACCAGTGTTC-TTCTTCAGCTCAAGAAAGTCAAACACA 965042
Query 38122 TCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGA 38181
||| ||||||||| || | ||||| | | || || |||| ||||| || || ||
Sbjct 965043 TCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGG 965102
Query 38182 TTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTG 38241
| | ||| | | ||||| || || | ||| | ||| || || | |||||| || ||
Sbjct 965103 TCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACCATTTGAGTTA 965162
Query 38242 CCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATT 38301
|| ||| | || | || ||| | || | | || ||| || | | | || ||
Sbjct 965163 CCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTGCTACACCAATC 965222
Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361
|| |||||| ||| || || | ||| |||||||| | || ||| | || || || ||
Sbjct 965223 CCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAATGCCATCAATG 965282
Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421
||||||||||| || | || | || || || || | || || ||| || |||
Sbjct 965283 CTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTTAGTGCCTGCG 965342
Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481
|| || | || ||||| ||||| ||||||| || || |||| || || || ||
Sbjct 965343 TTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCA 965402
Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541
|| | ||||||||||| | ||| || || | || ||| ||||| ||||| || |||
Sbjct 965403 ATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAGCATGTGCTGT 965462
Query 38542 GGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATT 38601
|| | || | |||| ||| ||| || | || || |||| ||||| |
Sbjct 965463 GGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTAGCGTTTTAAAG 965522
Query 38602 CCAAAATAACTATATGAATAATCTCTATCGTA 38633
||||| || | || ||| |||| ||||| ||
Sbjct 965523 CCAAAGAAATTGTAAGAAAAATCCCTATCATA 965554
>seq19222
Length=928746
Score = 104 bits (114), Expect = 2e-17
Identities = 107/139 (77%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708
||||| | ||||| || || |||||||| ||| | || | || ||||| | || | |
Sbjct 773897 AACCT-CATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCT 773839
Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768
|||| | |||| | || |||||||| || ||||| ||||| |||||||| ||||||||||
Sbjct 773838 TTTTCAGCCAATAAATGGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAA 773779
Query 11769 ATGCTACTACTCTTTCTCC 11787
|||| || | |||||| ||
Sbjct 773778 ATGCCACAATTCTTTCACC 773760
>seq20084
Length=15297
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
||||| | || || ||||| || || || || | ||||||||||| |||||||| ||
Sbjct 12703 TCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCTTC 12762
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| || || || || || || ||||| ||||| || ||||||||||| ||||| ||
Sbjct 12763 AGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGGCC 12822
Query 11774 ACTAC 11778
|| ||
Sbjct 12823 ACCAC 12827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468372178046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |