Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq18889 311 8e-80 seq19222 104 2e-17 seq20084 91.5 1e-13 >seq18889 Length=1054283 Score = 311 bits (344), Expect = 8e-80 Identities = 995/1532 (65%), Gaps = 11/1532 (1%) Strand=Plus/Plus Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 |||| || ||| || ||||| ||||||| |||||| |||||||| | ||||| | || Sbjct 964027 TTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTG 964086 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 | || || ||||| || || | ||| ||||||||||| || | | |||||| | ||| | Sbjct 964087 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGG 964146 Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288 | || || ||||| || || | | ||||| || |||| || ||| || ||| ||| Sbjct 964147 AGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCT 964206 Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTA 37348 || || ||||| ||||| | || || || |||| |||||| || ||||| | Sbjct 964207 CCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGTATTGCA 964266 Query 37349 GAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTA 37408 |||| || ||||| |||| || | |||||||||||||| |||| ||| || | Sbjct 964267 GAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCA 964326 Query 37409 GTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATA 37468 ||||| || | || || || ||||| || || ||||| || || || ||||| | | Sbjct 964327 ACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCAGCA 964386 Query 37469 TTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCT 37528 | ||||| || || |||| ||| | || | || || |||| || | ||||| Sbjct 964387 GCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCT 964446 Query 37529 GAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGAT 37588 | |||||||| || || || || || ||| || || | | ||| ||||| | Sbjct 964447 GCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGT 964506 Query 37589 AATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCA 37648 | || || || || || || ||||| |||||| | || | || ||| || | | | Sbjct 964507 AGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGAGGCAA 964566 Query 37649 ACTTGTCGAA--CATAAATACGTTAT-TATTAACAAATTTACTCAACGAAATAGATCCTA 37705 ||| | ||| || | | |||| | | ||||| | | | | | ||| || | | Sbjct 964567 GCTTTTTGAAATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAGCAATTGAGGCCA 964626 Query 37706 GATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTAC 37765 ||||| || || |||||||||| | | || | | | |||||| || || | |||| Sbjct 964627 AGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTAC 964686 Query 37766 TCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATA 37825 | || | || || |||||||| || || || | ||||| | |||||| || | Sbjct 964687 TGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACA 964746 Query 37826 GTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-T 37884 || || || ||||| |||| | |||| ||| || || | | ||| | || || Sbjct 964747 ACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCA-CACCTGCTGA 964805 Query 37885 GCTTTAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAA 37944 || || || | | || | | | || ||| ||| | | || | || | ||| Sbjct 964806 GCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTCAAAC 964865 Query 37945 TCATTCCCCCATACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATT 38002 || | |||||| ||| | ||| || || || || || | |||||||| | |||||| | Sbjct 964866 TCCTCCCCCCA-ACA-CTCATCCAACCCAGGGCACTCACTGGGACACATCAAAGACCAGT 964923 Query 38003 CTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAAT 38062 | | | ||||| || | | ||| || | ||||| | ||||| ||| || | | Sbjct 964924 CCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGAGGT 964983 Query 38063 CTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATA 38121 || | || | || || || || ||| ||||| |||| ||||| || || | | Sbjct 964984 CTCGCGCCCTCTGCTCCTCTTTACCAGTGTTC-TTCTTCAGCTCAAGAAAGTCAAACACA 965042 Query 38122 TCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGA 38181 ||| ||||||||| || | ||||| | | || || |||| ||||| || || || Sbjct 965043 TCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGG 965102 Query 38182 TTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTG 38241 | | ||| | | ||||| || || | ||| | ||| || || | |||||| || || Sbjct 965103 TCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACCATTTGAGTTA 965162 Query 38242 CCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATT 38301 || ||| | || | || ||| | || | | || ||| || | | | || || Sbjct 965163 CCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTGCTACACCAATC 965222 Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361 || |||||| ||| || || | ||| |||||||| | || ||| | || || || || Sbjct 965223 CCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAATGCCATCAATG 965282 Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 ||||||||||| || | || | || || || || | || || ||| || ||| Sbjct 965283 CTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTTAGTGCCTGCG 965342 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 || || | || ||||| ||||| ||||||| || || |||| || || || || Sbjct 965343 TTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCA 965402 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 || | ||||||||||| | ||| || || | || ||| ||||| ||||| || ||| Sbjct 965403 ATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAGCATGTGCTGT 965462 Query 38542 GGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATT 38601 || | || | |||| ||| ||| || | || || |||| ||||| | Sbjct 965463 GGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTAGCGTTTTAAAG 965522 Query 38602 CCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||||| || | || ||| |||| ||||| || Sbjct 965523 CCAAAGAAATTGTAAGAAAAATCCCTATCATA 965554 >seq19222 Length=928746 Score = 104 bits (114), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| ||| | || | || ||||| | || | | Sbjct 773897 AACCT-CATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCT 773839 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 |||| | |||| | || |||||||| || ||||| ||||| |||||||| |||||||||| Sbjct 773838 TTTTCAGCCAATAAATGGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAA 773779 Query 11769 ATGCTACTACTCTTTCTCC 11787 |||| || | |||||| || Sbjct 773778 ATGCCACAATTCTTTCACC 773760 >seq20084 Length=15297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 ||||| | || || ||||| || || || || | ||||||||||| |||||||| || Sbjct 12703 TCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCTTC 12762 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || || ||||| ||||| || ||||||||||| ||||| || Sbjct 12763 AGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGGCC 12822 Query 11774 ACTAC 11778 || || Sbjct 12823 ACCAC 12827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468372178046400