Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq21541 165 6e-36 seq20084 87.8 1e-12 >seq21541 Length=481625 Score = 165 bits (182), Expect = 6e-36 Identities = 231/323 (72%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 |||||||| ||||| |||||||||||||||| ||||||||| |||||| | | Sbjct 478467 CATTTCCCAGTCTTCTCCTGCAAAGAGGACTGTGACATCATCACGGACACGGCGTCTAAG 478526 Query 91859 CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTG 91918 ||||| | || || ||||||||||||||| |||| || |||||||| || ||| ||| Sbjct 478527 CTGGAGCGCAGCGGGTTCTACTGGGGTCCTCTGGGCGTGGAGGAGGCTCACCGT---CTG 478583 Query 91919 CGCAACTCGG---CACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTG 91975 | ||| || | |||||||| ||||| || || || || | || |||||||| || Sbjct 478584 CTCAAAGAGGCTCCTCTGGGCAGTTTTCTGATCCGAGACAGTCGTCAGAAGGACGTGTTC 478643 Query 91976 TTCACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGAC 92035 ||||| ||||| || ||||| || ||| || ||||| ||| | || || ||||| | Sbjct 478644 TTCACTCTGTCCTACCACTCCAAGAGCGGCCCGGTCAGCGTGCGCATCGATTACAAAAAA 478703 Query 92036 AAGCAATTTTCCTTGGCTGGGAGCAAACAGAGGTTTTCATCGGTCCTTCTCCTGTTGGAC 92095 | | || ||| ||||||| | | | | || ||||| || || || ||||| Sbjct 478704 CACCGGTTCTCCCTGGCTGGAAACGAGCGCTCCTTCCCATCGCTCTTTGCTCTATTGGAA 478763 Query 92096 CATTACATCGGTGGGCCCAATAA 92118 ||||||||| | |||||| || Sbjct 478764 CATTACATCAGCTCGCCCAAAAA 478786 >seq20084 Length=15297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| || || || | || ||||| || || || ||||| ||||||| Sbjct 12823 TGGCCTTTGCTGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCCGCCATTTTCTGGC 12764 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 |||||||||| || ||||| || || | || |||||||| | || ||||| |||| Sbjct 12763 TGAAGAAACGAGGCCTGATGCCCGGACTGACTTTCTCCAACGAACTTATCAGCCGCGACG 12704 Query 22868 A 22868 | Sbjct 12703 A 12703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356120457982180