Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18889 711 0.0 seq22773 127 3e-24 seq20084 102 1e-16 seq19222 89.7 7e-13 >seq18889 Length=1054283 Score = 711 bits (788), Expect = 0.0 Identities = 1354/1979 (68%), Gaps = 31/1979 (2%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| ||||||||| | || || | | ||||||| ||||| || ||||| | | Sbjct 963962 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 964021 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || |||| | | || ||||| || || || | ||||| |||||||||| ||||| Sbjct 964022 TTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCT 964081 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | ||| | || ||||| || || | ||||| || Sbjct 964082 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGC 964141 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || || |||||||| |||| ||| | || || || | ||||| | || Sbjct 964142 TGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAAT 964201 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 || || || || || |||| | ||||| || |||| || || | ||| | || | Sbjct 964202 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGT 964260 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 |||| ||||| || |||| | || |||| |||||| |||||||| || ||||||| Sbjct 964261 ATTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTT 964320 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 | || || || || || ||||| | || | || || |||||||| || |||| ||| Sbjct 964321 CTGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATAT 964380 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 | || || ||||| || |||||||||||| | ||| || || || ||||| | Sbjct 964381 TCAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAA 964440 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 || || ||||| || || || || || || | ||| || ||| | || ||||| |||| Sbjct 964441 GACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAA 964500 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTT---GACCA 79561 || || || ||||| || || || ||||||||||| || || |||||||| ||| Sbjct 964501 CTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTG 964560 Query 79562 ---CATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA---TTACAAACATGTTCAACG 79615 || |||| |||| ||||||| | ||| | ||| ||||||| | | Sbjct 964561 AGGCAAGCTTT---TTGA---AATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAG 964614 Query 79616 CGACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTC 79673 | | || |||| ||||| |||||||| |||| | || | | ||| | | || || Sbjct 964615 CAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT--GTATACTCCACAATCTC 964672 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 |||||| | |||||| || || ||||| || ||||| || || |||||||| ||||||| Sbjct 964673 AGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACA 964732 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 ||||| || || | ||| | || || || ||||| ||||||| ||||| || || | Sbjct 964733 GGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATA 964792 Query 79794 CCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATA 79853 ||| || ||||||| | | ||| ||| || ||| ||| |||| || Sbjct 964793 CCACACCTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTA 964852 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | || ||||| || |||||| || || || ||||| || || |||||||| Sbjct 964853 CAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACAT 964912 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 ||| ||||| || | | | |||| ||||| || || ||||| ||||| || || Sbjct 964913 CAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGC 964972 Query 79974 TATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 ||| || || |||| | || |||||||| || || || ||||| || || || || | Sbjct 964973 -ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAA 965031 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092 | | | | |||| | ||||| || |||||||| ||||| | | ||||||||||| | Sbjct 965032 AGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTAT 965091 Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152 | || || || || | || | || ||||| || || ||||||| ||| || | || || Sbjct 965092 TGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGAC 965151 Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 80212 |||| || ||||||| || || | || || ||||| | | | |||| |||| || Sbjct 965152 CATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTG 965211 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 || ||| || || ||||| ||||||||| | || ||| |||| | || ||||| | Sbjct 965212 CTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAA 965271 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 |||| || ||||| ||||| ||||| || || || ||||| || | ||| | | Sbjct 965272 TGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGT 965331 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 |||| || || || || | || ||||| || || || ||||| || |||||||| || | Sbjct 965332 TAGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGT 965391 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| |||||||| |||| |||||||| | | || ||||| || || || | ||| | Sbjct 965392 TGTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGA 965451 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||||||||| || | ||| | | || ||| ||||||| ||||||||| || | Sbjct 965452 GCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTA 965511 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 |||||||| ||||| | ||||| ||||| || | || ||||| ||| | ||||||| Sbjct 965512 GCGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGA 965571 Query 80573 GTTTATCCTTATATTTGTTA--ACTACATCCATGGTGATACTT--GAAATAATCGGAGAA 80628 | || | | |||| | || | ||| | |||| ||| || || || || || Sbjct 965572 GGCGGTC--TTTGTTTGCAAGGACAAGATCTAGGGTG--TCTTGGGAGATCATGGGGGAG 965627 Query 80629 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 80688 || | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | Sbjct 965628 TGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACGTCACTGAACACC 965687 Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || || || || |||||||| || || |||| || || | |||||||||||| Sbjct 965688 TTCTTGGTCTCTTTATGGAGATTTGACACAGCAATTCGTGCAGCCAGGATGGCATAATCT 965747 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || || | || || ||||| || || || || || || ||||||| || || || Sbjct 965748 GGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAGCTCCACAGTG 965807 Query 80809 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 80868 || ||||| | || | |||||||| |||||||| | |||| | || || | | Sbjct 965808 GTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAAC 965867 Query 80869 TCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 || | || | |||||||| | || || ||||| |||||||||||||||||||| Sbjct 965868 TCCGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 965926 >seq22773 Length=730387 Score = 127 bits (140), Expect = 3e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||||||||| || | | |||| |||||| || ||||| || || | ||| Sbjct 299792 TATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCATAA 299851 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||||||| || ||||||| | ||||||| || || ||| || |||||||||||| Sbjct 299852 TAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCAAATGGATAA 299911 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | |||||| || ||||| || | || |||||||| || || |||||||| || | | Sbjct 299912 CGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGTCTGTGGCGC 299971 Query 79480 TTATTAGA 79487 | ||||| Sbjct 299972 ATGTTAGA 299979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || ||||||||||| ||||| || ||||| ||||| | ||| ||||| | || ||| ||| Sbjct 300724 ACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTGC 300783 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 ||||| || || || || || |||||| || |||||| | | | |||| ||||||| || Sbjct 300784 TCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATGG 300842 Query 80058 TTCCAAGTA 80066 || | ||| Sbjct 300843 CTCGAGGTA 300851 >seq20084 Length=15297 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| | || || ||||||||||| || || ||||||||||| ||||| || || | Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| |||||||| || || || || ||||||| Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820 Query 50102 CAAC 50105 | || Sbjct 12821 CCAC 12824 >seq19222 Length=928746 Score = 89.7 bits (98), Expect = 7e-13 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 50454 ATCT-ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 50512 |||| || || ||||||||||| || ||||||| ||||| || ||||| |||||||||| Sbjct 772325 ATCTCACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGT 772266 Query 50513 CATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || | || || || ||||| || |||||||| | |||||| Sbjct 772265 CAGGGTACTGTATGGGGAACATCACAAATCTTCTGGGATTT 772225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718034823938400