Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18889 659 0.0 seq22773 131 2e-25 seq20084 93.3 6e-14 >seq18889 Length=1054283 Score = 659 bits (730), Expect = 0.0 Identities = 1358/2011 (68%), Gaps = 32/2011 (2%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| ||||||||| | ||||| | | |||| || ||||| || ||||| | | Sbjct 963962 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 964021 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || |||| | | || ||||| || || || | ||||| |||||||||| ||||| Sbjct 964022 TTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCT 964081 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 964082 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGC 964141 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || |||||||| |||| ||| || || || || | ||| ||| || Sbjct 964142 TGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAAT 964201 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || || | || || Sbjct 964202 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGT 964260 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| |||| | || |||| ||||| || || || || || |||| Sbjct 964261 ATTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTT 964320 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 | || | || || || ||||| | || |||| || |||||||| || |||| ||| Sbjct 964321 CTGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATAT 964380 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | || || ||||| | || |||||||||||| | ||| || || || ||||| | Sbjct 964381 TCAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAA 964440 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || || || || || || || ||||| | ||| || ||| | || ||||| |||| Sbjct 964441 GACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAA 964500 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTT---GACCA 71644 || || || ||||| || || || |||||||||||||| || |||||||| ||| Sbjct 964501 CTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTG 964560 Query 71645 ---CATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGG 71698 || |||| |||| ||||||| | | ||| | ||| ||| ||| | | Sbjct 964561 AGGCAAGCTTT---TTGA---AATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAG 964614 Query 71699 CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTC 71756 ||| || |||| ||||| |||||||| |||| | || | | ||| | | ||| || Sbjct 964615 CAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT--GTATACTCCACAATCTC 964672 Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816 |||||| | ||||| || |||||||| || ||||| || || |||||||| ||||||| Sbjct 964673 AGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACA 964732 Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 ||||| || || | || | || || || ||||| ||||||| ||||| || || | Sbjct 964733 GGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATA 964792 Query 71877 CCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATA 71936 ||| || ||||||| | | ||| ||| || ||| ||| |||| || Sbjct 964793 CCACACCTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTA 964852 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996 | || ||||| || |||||| | || || ||||| || ||| | |||||||| Sbjct 964853 CAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACAT 964912 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 ||| ||||| || | | | |||| ||||| || || ||||| ||||| || || Sbjct 964913 CAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGC 964972 Query 72057 TATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115 ||| || || |||| | || |||||||| || || || ||||| || || || || | Sbjct 964973 -ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAA 965031 Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175 | | | | |||| | ||||| || |||||||| ||||| | | ||||| ||||| | Sbjct 965032 AGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTAT 965091 Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235 | || || || || | || | || ||||| || || ||||||| ||| || | || || Sbjct 965092 TGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGAC 965151 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295 |||| || |||||| || || | || || ||||| | | | |||| ||||| || Sbjct 965152 CATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTG 965211 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 || ||| || || ||||| ||||||||| | || ||| |||| | || ||||| | Sbjct 965212 CTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAA 965271 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 |||| || || || |||||| ||||| || || || ||||| || | ||| | | Sbjct 965272 TGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGT 965331 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 |||| || || || || | || ||||| || || || ||||| || |||||||| || | Sbjct 965332 TAGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGT 965391 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| |||||||| |||| |||||||| | | || ||||| || || || | ||| | Sbjct 965392 TGTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGA 965451 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| ||||| || | ||| | | || ||| ||||||| |||||| || || | Sbjct 965452 GCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTA 965511 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 |||||||| ||||| | ||||| ||||| || | || ||||| ||| | || |||| Sbjct 965512 GCGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGA 965571 Query 72656 GTTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTTG--AAATAATCGGAGAA 72711 | || || | ||| | || | ||| | |||| |||| | || || || || Sbjct 965572 GGCGGTCTTTGT--TTGCAAGGACAAGATCTAGGGTGT--CTTGGGAGATCATGGGGGAG 965627 Query 72712 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 72771 || | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | Sbjct 965628 TGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACGTCACTGAACACC 965687 Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || || || |||||||| || || |||| || || || |||||||||||| Sbjct 965688 TTCTTGGTCTCTTTATGGAGATTTGACACAGCAATTCGTGCAGCCAGGATGGCATAATCT 965747 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 || || | || || ||||| || || ||||| || || ||||||| || || || Sbjct 965748 GGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAGCTCCACAGTG 965807 Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 72951 || ||||| | || | |||||||| |||||||| | |||| | || || | | Sbjct 965808 GTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAAC 965867 Query 72952 TCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACA 73011 || | || | |||||||| | || || ||||| ||||||||||||||||| || Sbjct 965868 TCCGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGACG 965927 Query 73012 TTTTCCCGGCATCCATTTCGTTTAACGACAA 73042 ||| ||| ||||| | | |||||||| Sbjct 965928 CGCTCCTGGCGTCCATCT-GAAAAACGACAA 965957 >seq22773 Length=730387 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || || |||||||| || || ||||| |||| | ||||||||||| || ||||| || Sbjct 299783 GAGCCAGCATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAA 299842 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || ||||||||||||| || ||||||| | ||||||| || || || || ||| Sbjct 299843 GCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCA 299902 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 ||||||||| | |||||| || ||||| || | || ||||| || || || |||||| Sbjct 299903 AATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGT 299962 Query 71554 CTGTGTCTCTTATTAGA 71570 ||||| | | | ||||| Sbjct 299963 CTGTGGCGCATGTTAGA 299979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || ||||||||||| ||||| || ||||| ||||| | ||| ||||| | || ||| ||| Sbjct 300724 ACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTGC 300783 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||||| || || || || || |||||| || |||||| | | | |||| ||||||| || Sbjct 300784 TCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATGG 300842 Query 72141 TTCCAAGTA 72149 || | ||| Sbjct 300843 CTCGAGGTA 300851 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || || || ||||| | ||| || || || || | || || || | Sbjct 301996 CACTGAATACTTTCTTGGTCTCTTTGTGCAAATTGGACACAGCGATGCGTGCAGCGAGGA 302055 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || || || |||| || || || || || | ||||| || | |||||||| Sbjct 302056 TGGCGTAGTCAGGGTGTTTGGTGGTCAGTGTAGCAGCGGTCTCTGCAGCTAAAGTGTCCA 302115 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 |||| || || || |||||| | || | || ||||| |||||||||| |||| Sbjct 302116 ATTCCACAGTGGTCACTCCACTGTACAGCCCCTGGATCACCTTCATAGTGATTT 302169 >seq20084 Length=15297 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| || | || || | ||||||||| || || ||||||||||| ||||| || || | Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || |||||||| |||||||| || || || || ||||||| Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820 Query 42207 C 42207 | Sbjct 12821 C 12821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670920576405600