Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 659 0.0
seq22773 131 2e-25
seq20084 93.3 6e-14
>seq18889
Length=1054283
Score = 659 bits (730), Expect = 0.0
Identities = 1358/2011 (68%), Gaps = 32/2011 (2%)
Strand=Plus/Plus
Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108
||| ||||||||| | ||||| | | |||| || ||||| || ||||| | |
Sbjct 963962 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 964021
Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168
|| |||| | | || ||||| || || || | ||||| |||||||||| |||||
Sbjct 964022 TTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCT 964081
Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228
|| ||||| || || ||||| || | ||| | |||||||| || || | ||||| ||
Sbjct 964082 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGC 964141
Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288
|| || || || |||||||| |||| ||| || || || || | ||| ||| ||
Sbjct 964142 TGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAAT 964201
Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347
|| || || || || |||| | | ||| || || | || ||
Sbjct 964202 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGT 964260
Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407
||||| |||| | || |||| ||||| || || || || || ||||
Sbjct 964261 ATTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTT 964320
Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467
| || | || || || ||||| | || |||| || |||||||| || |||| |||
Sbjct 964321 CTGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATAT 964380
Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527
| || || ||||| | || |||||||||||| | ||| || || || ||||| |
Sbjct 964381 TCAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAA 964440
Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587
|| || || || || || || || ||||| | ||| || ||| | || ||||| ||||
Sbjct 964441 GACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAA 964500
Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTT---GACCA 71644
|| || || ||||| || || || |||||||||||||| || |||||||| |||
Sbjct 964501 CTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTG 964560
Query 71645 ---CATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGG 71698
|| |||| |||| ||||||| | | ||| | ||| ||| ||| | |
Sbjct 964561 AGGCAAGCTTT---TTGA---AATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAG 964614
Query 71699 CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTC 71756
||| || |||| ||||| |||||||| |||| | || | | ||| | | ||| ||
Sbjct 964615 CAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT--GTATACTCCACAATCTC 964672
Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816
|||||| | ||||| || |||||||| || ||||| || || |||||||| |||||||
Sbjct 964673 AGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACA 964732
Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876
||||| || || | || | || || || ||||| ||||||| ||||| || || |
Sbjct 964733 GGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATA 964792
Query 71877 CCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATA 71936
||| || ||||||| | | ||| ||| || ||| ||| |||| ||
Sbjct 964793 CCACACCTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTA 964852
Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996
| || ||||| || |||||| | || || ||||| || ||| | ||||||||
Sbjct 964853 CAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACAT 964912
Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056
||| ||||| || | | | |||| ||||| || || ||||| ||||| || ||
Sbjct 964913 CAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGC 964972
Query 72057 TATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115
||| || || |||| | || |||||||| || || || ||||| || || || || |
Sbjct 964973 -ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAA 965031
Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175
| | | | |||| | ||||| || |||||||| ||||| | | ||||| ||||| |
Sbjct 965032 AGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTAT 965091
Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235
| || || || || | || | || ||||| || || ||||||| ||| || | || ||
Sbjct 965092 TGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGAC 965151
Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295
|||| || |||||| || || | || || ||||| | | | |||| ||||| ||
Sbjct 965152 CATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTG 965211
Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355
|| ||| || || ||||| ||||||||| | || ||| |||| | || ||||| |
Sbjct 965212 CTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAA 965271
Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415
|||| || || || |||||| ||||| || || || ||||| || | ||| | |
Sbjct 965272 TGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGT 965331
Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475
|||| || || || || | || ||||| || || || ||||| || |||||||| || |
Sbjct 965332 TAGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGT 965391
Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535
|||| |||||||| |||| |||||||| | | || ||||| || || || | ||| |
Sbjct 965392 TGTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGA 965451
Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595
||| ||||| || | ||| | | || ||| ||||||| |||||| || || |
Sbjct 965452 GCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTA 965511
Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655
|||||||| ||||| | ||||| ||||| || | || ||||| ||| | || ||||
Sbjct 965512 GCGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGA 965571
Query 72656 GTTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTTG--AAATAATCGGAGAA 72711
| || || | ||| | || | ||| | |||| |||| | || || || ||
Sbjct 965572 GGCGGTCTTTGT--TTGCAAGGACAAGATCTAGGGTGT--CTTGGGAGATCATGGGGGAG 965627
Query 72712 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 72771
|| | |||| |||||| ||||||| ||| | ||||||||| || ||||| || |
Sbjct 965628 TGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACGTCACTGAACACC 965687
Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831
|| || || || || || |||||||| || || |||| || || || ||||||||||||
Sbjct 965688 TTCTTGGTCTCTTTATGGAGATTTGACACAGCAATTCGTGCAGCCAGGATGGCATAATCT 965747
Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891
|| || | || || ||||| || || ||||| || || ||||||| || || ||
Sbjct 965748 GGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAGCTCCACAGTG 965807
Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 72951
|| ||||| | || | |||||||| |||||||| | |||| | || || | |
Sbjct 965808 GTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAAC 965867
Query 72952 TCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACA 73011
|| | || | |||||||| | || || ||||| ||||||||||||||||| ||
Sbjct 965868 TCCGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGACG 965927
Query 73012 TTTTCCCGGCATCCATTTCGTTTAACGACAA 73042
||| ||| ||||| | | ||||||||
Sbjct 965928 CGCTCCTGGCGTCCATCT-GAAAAACGACAA 965957
>seq22773
Length=730387
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|| || |||||||| || || ||||| |||| | ||||||||||| || ||||| ||
Sbjct 299783 GAGCCAGCATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAA 299842
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|| ||||||||||||| || ||||||| | ||||||| || || || || |||
Sbjct 299843 GCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCA 299902
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
||||||||| | |||||| || ||||| || | || ||||| || || || ||||||
Sbjct 299903 AATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGT 299962
Query 71554 CTGTGTCTCTTATTAGA 71570
||||| | | | |||||
Sbjct 299963 CTGTGGCGCATGTTAGA 299979
Score = 91.5 bits (100), Expect = 2e-13
Identities = 99/129 (77%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| ||||||||||| ||||| || ||||| ||||| | ||| ||||| | || ||| |||
Sbjct 300724 ACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTGC 300783
Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
||||| || || || || || |||||| || |||||| | | | |||| ||||||| ||
Sbjct 300784 TCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATGG 300842
Query 72141 TTCCAAGTA 72149
|| | |||
Sbjct 300843 CTCGAGGTA 300851
Score = 89.7 bits (98), Expect = 7e-13
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| |||| ||| || || || ||||| | ||| || || || || | || || || |
Sbjct 301996 CACTGAATACTTTCTTGGTCTCTTTGTGCAAATTGGACACAGCGATGCGTGCAGCGAGGA 302055
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
|||| || || || |||| || || || || || | ||||| || | ||||||||
Sbjct 302056 TGGCGTAGTCAGGGTGTTTGGTGGTCAGTGTAGCAGCGGTCTCTGCAGCTAAAGTGTCCA 302115
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934
|||| || || || |||||| | || | || ||||| |||||||||| ||||
Sbjct 302116 ATTCCACAGTGGTCACTCCACTGTACAGCCCCTGGATCACCTTCATAGTGATTT 302169
>seq20084
Length=15297
Score = 93.3 bits (102), Expect = 6e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| || | || || | ||||||||| || || ||||||||||| ||||| || || |
Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | || || |||||||| |||||||| || || || || |||||||
Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820
Query 42207 C 42207
|
Sbjct 12821 C 12821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670920576405600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |