Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18889 127 3e-24 >seq18889 Length=1054283 Score = 127 bits (140), Expect = 3e-24 Identities = 346/523 (66%), Gaps = 20/523 (4%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 |||||| || ||| | | ||| || ||||| ||||| ||| ||||||| || || ||| Sbjct 965171 AACAAATGGTAACTCAAATGGTCTTGTGCCGATGCTGAGAGTGTACAACAACACTG-CAC 965113 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || || || ||||||||||| || || || | ||| | |||||||| || | Sbjct 965112 GCTATGTGGACCAAGGTGGCAATAAACGACCGGGTGCCTTTGCCATTTACTTGGAGCCAT 965053 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| || || ||||||||| | ||| || || ||| |||| | |||||| | Sbjct 965052 GGCACTTTGATGTGTTTGACTTTCTTGAGCTGAAGAAGAACACTGG---TAAAGAGGAGC 964996 Query 96985 ---GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT-- 97039 | || | ||| | || ||||| || ||| | || || ||||||||||| | || Sbjct 964995 AGAGGGCGCGAGACCTCTTCTATGCCCTATGGATCCCTGACCTGTTCATGAAGAGAGTGG 964936 Query 97040 -CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATT 97098 ||| || | ||||| | ||||| ||| || || || || || | Sbjct 964935 AAAACAACCAGG---ACTGGTCTTTGATGTGTCCCAGTGAGTGCCCTGGGTTGGATGAGT 964879 Query 97099 GCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA 97158 | ||||| || ||||||||| |||||| || || || ||||| || |||| Sbjct 964878 GTTGGGGGGAGGAGTTTGAGAAGCTGTACACACGATATGAACAGGAGGGTAGA---GTGA 964822 Query 97159 GACG---AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTG 97215 || ||| | || | | ||||| | |||||| | | ||||| ||| || | Sbjct 964821 AGCGGGTGGTCAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACAGAAACGG 964762 Query 97216 GAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGG 97275 |||| || ||||| | ||||| ||| || || | || || ||||| | | |||| Sbjct 964761 GAACACCTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAACCAGCAGAATTTGG 964702 Query 97276 GCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 |||||||||| || || ||||||| || ||||| ||||| Sbjct 964701 GCACCATCAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTA 964659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740817799965600