Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq777 89.7 3e-13 seq20231 87.8 9e-13 seq25680 84.2 1e-11 seq11854 84.2 1e-11 seq6967 84.2 1e-11 seq25099 82.4 4e-11 seq21953 82.4 4e-11 seq20552 82.4 4e-11 seq17582 82.4 4e-11 seq16312 82.4 4e-11 >seq777 Length=864825 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 225772 AAAAAAGCTCATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 225831 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 225832 GCTCTAACCAACTGAGCTAACCGGCC 225857 >seq20231 Length=282808 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 188834 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 188893 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 188894 CTGAGCTAACCGGCCGT 188910 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 28370 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 28429 Query 11528 CC 11529 || Sbjct 28430 CC 28431 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 31301 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31360 Query 11528 CC 11529 || Sbjct 31361 CC 31362 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 34366 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 34425 Query 11528 CC 11529 || Sbjct 34426 CC 34427 >seq25680 Length=150779 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 74496 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 74555 Query 11528 CCGTC 11532 || || Sbjct 74556 CCTTC 74560 >seq11854 Length=767894 Score = 84.2 bits (92), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||| || |||||| || | |||||| | |||||||||| ||||||| ||||| Sbjct 449695 AGAAGGAAAAAAAAAAAAAGGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTT 449754 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||| |||||||||||||| |||| Sbjct 449755 ATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 449791 >seq6967 Length=83583 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| | | |||||||||| |||||||| ||||||||||||| ||||||| || Sbjct 82657 AAACTGGCCAGTAAGGGGATCGAACCCTCGACCTTGGCGTTATTAGCACCACGCTCTAAC 82716 Query 11512 CAACTGAGCTAATGGGCC 11529 || ||||||||| |||| Sbjct 82717 CAGCTGAGCTAACCGGCC 82734 >seq25099 Length=658430 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 345121 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 345062 Query 11528 CC 11529 || Sbjct 345061 CC 345060 >seq21953 Length=231393 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 186435 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 186376 Query 11528 CC 11529 || Sbjct 186375 CC 186374 >seq20552 Length=1901804 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1315513 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1315454 Query 11528 CC 11529 || Sbjct 1315453 CC 1315452 >seq17582 Length=44543 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 40130 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 40189 Query 11528 CC 11529 || Sbjct 40190 CC 40191 >seq16312 Length=416328 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 50389 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 50330 Query 11528 CC 11529 || Sbjct 50329 CC 50328 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261408148760560