Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq777 89.7 3e-13
seq20231 87.8 9e-13
seq25680 84.2 1e-11
seq11854 84.2 1e-11
seq6967 84.2 1e-11
seq25099 82.4 4e-11
seq21953 82.4 4e-11
seq20552 82.4 4e-11
seq17582 82.4 4e-11
seq16312 82.4 4e-11
>seq777
Length=864825
Score = 89.7 bits (98), Expect = 3e-13
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| | |||||||| | |||||||||| ||||||| ||||||||||||| ||
Sbjct 225772 AAAAAAGCTCATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 225831
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||||||||||||| ||||
Sbjct 225832 GCTCTAACCAACTGAGCTAACCGGCC 225857
>seq20231
Length=282808
Score = 87.8 bits (96), Expect = 9e-13
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 188834 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 188893
Query 11515 CTGAGCTAATGGGCCGT 11531
||||||||| ||||||
Sbjct 188894 CTGAGCTAACCGGCCGT 188910
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 28370 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 28429
Query 11528 CC 11529
||
Sbjct 28430 CC 28431
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 31301 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31360
Query 11528 CC 11529
||
Sbjct 31361 CC 31362
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 34366 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 34425
Query 11528 CC 11529
||
Sbjct 34426 CC 34427
>seq25680
Length=150779
Score = 84.2 bits (92), Expect = 1e-11
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 74496 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 74555
Query 11528 CCGTC 11532
|| ||
Sbjct 74556 CCTTC 74560
>seq11854
Length=767894
Score = 84.2 bits (92), Expect = 1e-11
Identities = 77/97 (79%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 11435 AGAATTAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492
|||| || |||||| || | |||||| | |||||||||| ||||||| |||||
Sbjct 449695 AGAAGGAAAAAAAAAAAAAGGAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTT 449754
Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||| |||||||||||||| ||||
Sbjct 449755 ATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 449791
>seq6967
Length=83583
Score = 84.2 bits (92), Expect = 1e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| | | |||||||||| |||||||| ||||||||||||| ||||||| ||
Sbjct 82657 AAACTGGCCAGTAAGGGGATCGAACCCTCGACCTTGGCGTTATTAGCACCACGCTCTAAC 82716
Query 11512 CAACTGAGCTAATGGGCC 11529
|| ||||||||| ||||
Sbjct 82717 CAGCTGAGCTAACCGGCC 82734
>seq25099
Length=658430
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 345121 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 345062
Query 11528 CC 11529
||
Sbjct 345061 CC 345060
>seq21953
Length=231393
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 186435 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 186376
Query 11528 CC 11529
||
Sbjct 186375 CC 186374
>seq20552
Length=1901804
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1315513 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1315454
Query 11528 CC 11529
||
Sbjct 1315453 CC 1315452
>seq17582
Length=44543
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 40130 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 40189
Query 11528 CC 11529
||
Sbjct 40190 CC 40191
>seq16312
Length=416328
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 50389 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 50330
Query 11528 CC 11529
||
Sbjct 50329 CC 50328
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261408148760560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |