Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq22308 127 3e-24 >seq22308 Length=220414 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 8705 ACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCT 8764 |||||| | || ||||| ||| | | || | |||| ||| | || ||||| Sbjct 57183 ACGTTGTTGCACACTAGCCTCTGCAGCGAGGCCGTGTTGATGATGTCGAAGCCCACCGGG 57124 Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || ||||| ||||| || |||||||| | |||||||||||| |||| ||||||||||| Sbjct 57123 CCTCCGAAAGTGCTTGGCTTCCAGTATTCAGGGGAGCAGATGGCGTTTCCCATGAGGCCT 57064 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || || || |||| || | ||| |||| ||||| ||||||| | | | Sbjct 57063 TTGAGGGAGAAGGGGGCACCCATTTCCACCATGGTCTCCCCGAAAATGGCGTCCTGTCTG 57004 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 ||||| || |||| | || | ||||| |||||| || || | || ||| || Sbjct 57003 GGCTTCTCGACCAGCAGACCCGGGTACAGCTCCACGGCATCCACGTGTCCATA 56951 Score = 89.7 bits (98), Expect = 7e-13 Identities = 129/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 9671 CTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCA 9730 ||| ||| || ||||| || || | |||||| || | |||||||| ||||||||||||| Sbjct 54316 CTCCTTT-AGTACATCACATACGCGGTTGTGCTCACGCAGCCAGATCGTAGCGTACATCA 54258 Query 9731 TGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCA 9790 |||| ||||| ||||||||||| || || || || || || | ||| || | | Sbjct 54257 TGAGCCCAGGGACCAGGCCAAAGGCTTCGTGCCCCACTGCAAACCGCTGGGACTCTGCGA 54198 Query 9791 CTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850 | | || || ||| ||||| ||| || || | || | ||||||||||| |||| Sbjct 54197 CGTGTGGGGGGTAGTGCATGTCCACACCAACGTCCCTCACTGTTGGGGGATACATCTCAC 54138 Query 9851 C 9851 | Sbjct 54137 C 54137 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 10305 GGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTAATAGGAGAGATTGGAG 10364 || ||||||||||| | ||||| || || || ||| | | ||||||| | || || Sbjct 52465 GGTGTTGGACAATCCTCCGGAACAGGGGGGAGTGTCCGGGTGAAATAGGACAAGTTTGAA 52406 Query 10365 AAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGGAGGGCTGTCAATCAAA 10424 | |||||||||||| ||| |||| |||||||||||| | || ||||||||||||| | Sbjct 52405 TAGGCTTCCCAGCTTTTGTACCCGTAATCCGCGTTGTAGGTTGGTGGGCTGTCAATCATA 52346 Query 10425 T 10425 | Sbjct 52345 T 52345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708293998046400