Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20709 174 2e-39 seq24033 159 5e-35 seq17943 145 1e-30 seq23184 138 2e-28 seq19539 136 6e-28 seq17191 136 6e-28 seq21518 132 8e-27 >seq20709 Length=307029 Score = 174 bits (192), Expect = 2e-39 Identities = 201/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| || ||||| || || ||||| Sbjct 35790 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACTAAACCCGCTAT 35849 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| |||| || || |||| || |||| Sbjct 35850 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 35909 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 35910 TCGCGGTGTCCTTAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 35969 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 35970 GCACGCCAAGAGAAAGACTGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 36029 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 36030 CCGCACTCTGTACGGCTTCGGAGGTTAAACT 36060 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| || || ||||| || ||||| Sbjct 40762 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGTATTACCAAACCCGCTAT 40821 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || |||||| |||| || || |||| || |||| Sbjct 40822 CCGCCGTCTGGCTCGCCGCGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 40881 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | ||||| ||| ||| || | ||| || || ||| ||||| Sbjct 40882 CCGCGGTGTTCTCAAGGTTTTCCTGGAGAACGTGATTCGTGACGCCGTCACCTACACCGA 40941 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 40942 GCATGCAAAGAGAAAGACTGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 41001 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 41002 CCGCACTCTGTACGGCTTCGGAGGTTAA 41029 Score = 141 bits (156), Expect = 1e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| || ||||||||||| || || ||||| || ||||| Sbjct 28516 CGCCAAGCGTCACCGTAAGGTTCTCCGTGATAACATCCAGGGTATTACCAAACCCGCTAT 28575 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || |||||| |||| || || |||| || |||| Sbjct 28576 CCGCCGTCTGGCTCGCCGCGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 28635 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 28636 CCGCGGTGTTCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 28695 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || | ||||| || || ||||||| Sbjct 28696 GCACGCCAAGAGGAAGACCGTGACTGCCATGGA 28728 >seq24033 Length=2185 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||| ||||| || || Sbjct 1106 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACTAAGCCCGCCAT 1165 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| ||||| || ||||| |||||| |||| || || ||||||| |||| Sbjct 1166 CCGTCGCCTGGCGCGTCGCGGCGGAGTGAAGCGTATCTCCGGCCTGATCTATGAGGAGAC 1225 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||||| ||| ||| |||| || || || || ||||| Sbjct 1226 TCGCGGGGTGCTCAAGGTATTCCTGGAGAACGTGATCCGCGACGCCGTCACTTACACCGA 1285 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | || ||||| || ||||||| | || || ||| |||| | || || Sbjct 1286 GCACGCCAAGAGAAAAACTGTGACAGCCATGGACGTGGTATACGCACTGAAGAGACAGGG 1345 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||||||| ||||| Sbjct 1346 CCGCACTCTCTACGGTTTTGGAGGTTAA 1373 >seq17943 Length=43558 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||| || || || || Sbjct 327 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACTAAACCCGCCAT 268 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| |||| || || |||| || |||| Sbjct 267 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCAGGTCTGATCTACGAGGAGAC 208 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 207 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 148 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | || || || | || | || || Sbjct 147 GCACGCCAAGAGGAAGACCGTGACTGCCATGGACGTGGTGTACGCGCTCAAGAGACAGGG 88 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| ||||| Sbjct 87 ACGCACTCTGTATGGTTTCGGAGGTTAA 60 >seq23184 Length=199094 Score = 138 bits (152), Expect = 2e-28 Identities = 193/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| || |||||||| || || || Sbjct 62371 CGCTAAGCGTCACCGTAAAGTTCTGCGTGATAACATCCAGGGCATCACCAAACCCGCCAT 62430 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| || || || || || |||||| | || || || ||||||| |||| Sbjct 62431 CCGCAGACTGGCGCGCCGCGGCGGTGTGAAGCGTATTTCCGGTCTGATCTATGAGGAGAC 62490 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 62491 CCGCGGTGTGCTCAAAGTTTTCCTGGAGAACGTGATCCGCGACGCAGTCACCTACACCGA 62550 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 62551 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCGCTGAAGAGACAGGG 62610 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 62611 CCGCACTCTCTACGGCTTCGGAGGTTAAGCT 62641 >seq19539 Length=19330 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || |||||||| || || || Sbjct 15974 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAACCCGCCAT 16033 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||| || || || |||||| |||| || || |||| || |||| Sbjct 16034 CCGCCGTCTGGCTCGTCGCGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 16093 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| ||| |||| ||| || | || ||||| Sbjct 16094 CCGCGGAGTGCTCAAGGTGTTTCTGGAGAACGTGATCCGTGACGCAGTGACGTACACCGA 16153 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 16154 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 16213 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 16214 CCGCACTCTGTACGGCTTCGGAGGTTAA 16241 >seq17191 Length=53944 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || |||||||| || || || Sbjct 2534 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAACCCGCCAT 2593 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||| || || || |||||| |||| || || |||| || |||| Sbjct 2594 CCGCCGTCTGGCTCGTCGCGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 2653 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| ||| |||| ||| || | || ||||| Sbjct 2654 CCGCGGAGTGCTCAAGGTGTTTCTGGAGAACGTGATCCGTGACGCAGTGACGTACACCGA 2713 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 2714 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 2773 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 2774 CCGCACTCTGTACGGCTTCGGAGGTTAA 2801 Score = 125 bits (138), Expect = 1e-24 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAA--GCCAGCT 16489 ||| |||||||| || | | ||| || || |||||||| || |||||||| |||| Sbjct 7531 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAACGCCAC-- 7474 Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||| |||||||||||||| || || || |||||| |||| || || |||| || ||| Sbjct 7473 ATCCGCCGTCTGGCTCGTCGCGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAG 7414 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || | ||| | || || ||| ||| |||| ||| || | || ||| Sbjct 7413 ACCCGCGGAGTGCTCAAGGTGTTTCTGGAGAACGTGATCCGTGACGCAGTGACGTACACC 7354 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || | ||||| || ||| ||||||| | || || || |||| | || Sbjct 7353 GAGCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAG 7294 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | | || || || ||| ||||| Sbjct 7293 GGCCGCACTCTGTACGGCTTCGGAGGTTAA 7264 >seq21518 Length=5902 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || |||||||| || || || Sbjct 3299 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAACCCGCCAT 3240 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||| || || || |||||| |||| || || |||| || |||| Sbjct 3239 CCGCCGTCTGGCTCGTCGCGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 3180 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| || |||| ||| || | || ||||| Sbjct 3179 CCGCGGAGTGCTCAAGGTGTTTCTGGAGAATGTGATCCGTGACGCAGTGACGTACACCGA 3120 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 3119 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 3060 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 3059 CCGCACTCTGTACGGCTTCGGAGGTTAA 3032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051373159580