Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq21827 488 9e-133 >seq21827 Length=6214 Score = 488 bits (540), Expect = 9e-133 Identities = 676/944 (72%), Gaps = 2/944 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 5071 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 5129 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 5130 ATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 5189 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| ||||| || || |||||||| || |||| |||| || || Sbjct 5190 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATA 5249 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || || |||||||| || | ||||||| ||| | ||||||||| Sbjct 5250 GGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGT 5309 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| || | | | | ||||| | | || | | || ||||| | Sbjct 5310 GGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 5369 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 5370 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 5429 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | || ||| | ||||| || || || Sbjct 5430 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCT 5489 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 |||||||||||| |||| || || || || |||||||||||| | ||||||||||| || Sbjct 5490 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAG 5549 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || |||||||||||||||||||| || ||| ||| || || ||| | ||||| || | Sbjct 5550 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 5609 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 5610 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 5669 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||| ||||| || || || ||||| Sbjct 5670 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTA 5729 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| ||||| || || || || | |||||||| ||||| ||||||||| | Sbjct 5730 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 5789 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 ||||||||||||||| || | |||||||| | || | ||||| || || | ||| Sbjct 5790 TCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGT 5849 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| || ||| ||||||| ||||| ||||||||||| || |||||| Sbjct 5850 ATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 5909 Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508 |||| || || ||| |||| |||| || | ||| | || ||| | ||||||||| Sbjct 5910 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAA 5969 Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||| ||| | || || || |||||||| || || |||| Sbjct 5970 GTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGC 6013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807292138893600