Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq21827 488 9e-133
>seq21827
Length=6214
Score = 488 bits (540), Expect = 9e-133
Identities = 676/944 (72%), Gaps = 2/944 (0%)
Strand=Plus/Plus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | |||||||| | ||| | | | ||||| | |||||
Sbjct 5071 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 5129
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| || ||||| || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 5130 ATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 5189
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | ||||| ||||| || || |||||||| || |||| |||| || ||
Sbjct 5190 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATA 5249
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
||||| || || || || || |||||||| || | ||||||| ||| | |||||||||
Sbjct 5250 GGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGT 5309
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| || | | | | ||||| | | || | | || ||||| |
Sbjct 5310 GGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 5369
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968
||||||||||| | |||| | |||||||| |||||||| |||||| ||||||||
Sbjct 5370 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 5429
Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028
||||| |||| ||| ||||| ||| | | || ||| | ||||| || || ||
Sbjct 5430 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCT 5489
Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088
|||||||||||| |||| || || || || |||||||||||| | ||||||||||| ||
Sbjct 5490 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAG 5549
Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148
|| |||||||||||||||||||| || ||| ||| || || ||| | ||||| || |
Sbjct 5550 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 5609
Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208
||||| ||||||||| ||||| | || || ||| | ||| | |||||||| |
Sbjct 5610 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 5669
Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268
|| || || | ||||||| ||||| ||||| ||||| || || || |||||
Sbjct 5670 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTA 5729
Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328
||||| ||||| || || || || | |||||||| ||||| ||||||||| |
Sbjct 5730 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 5789
Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388
||||||||||||||| || | |||||||| | || | ||||| || || | |||
Sbjct 5790 TCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGT 5849
Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448
|| |||| ||||| || ||| ||||||| ||||| ||||||||||| || ||||||
Sbjct 5850 ATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 5909
Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508
|||| || || ||| |||| |||| || | ||| | || ||| | |||||||||
Sbjct 5910 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAA 5969
Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552
|||||||| ||| | || || || |||||||| || || ||||
Sbjct 5970 GTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGC 6013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807292138893600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |