Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 663 0.0
seq22773 122 1e-22
seq20084 114 2e-20
seq19222 84.2 3e-11
>seq18889
Length=1054283
Score = 663 bits (734), Expect = 0.0
Identities = 1338/1978 (68%), Gaps = 29/1978 (1%)
Strand=Plus/Plus
Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302
||| ||||||||| | || || | | ||||||| ||||| || ||||| | |
Sbjct 963962 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 964021
Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362
|| |||| | | || ||||| || || || | ||||| |||||||||| |||||
Sbjct 964022 TTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCT 964081
Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422
|| ||||| || || ||||| || | ||| | |||||||| || || | ||||| ||
Sbjct 964082 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGC 964141
Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482
|| || || || |||||||| |||| ||| | || || || | ||||| | | ||
Sbjct 964142 TGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAAT 964201
Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542
|| || || || | | ||| | ||| || || | || ||
Sbjct 964202 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGTA 964261
Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602
||| ||||| || |||| | || ||| ||||| || || || || ||||| ||
Sbjct 964262 TTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTC 964321
Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662
|| | || || || ||||| | ||| | || || |||||||| ||||||| ||||
Sbjct 964322 TGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATT 964381
Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722
|| || ||||| || |||||||||||| | ||| || || || || || |
Sbjct 964382 CAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 964441
Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782
|| || ||||| || || || || || || | ||| || || | || ||||| ||||
Sbjct 964442 ACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 964501
Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 62838
|| || || ||||| || || || |||||||||||||| ||||||||||| |||
Sbjct 964502 TGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGA 964561
Query 62839 --CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGC 62893
|| ||| ||||| ||||||| | ||| | ||| ||||||| | ||
Sbjct 964562 GGCAAGCTT---TTTGA---AATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAGC 964615
Query 62894 AACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 62951
|| || |||| ||||| |||||||| |||| | || | | ||| | | ||||||
Sbjct 964616 AATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT--GTATACTCCACAATCTCA 964673
Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011
||||| | ||||| || ||||| || || ||||| || || |||||||| |||||||
Sbjct 964674 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 964733
Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071
||||| || || | ||| | || || || ||||| ||||||| ||||| || || | |
Sbjct 964734 GCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATAC 964793
Query 63072 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATAC 63131
|| || ||||||| | | || ||| | || ||| ||| |||| |||
Sbjct 964794 CACACCTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTAC 964853
Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191
| || ||||| || |||||| | ||||| ||||| || ||| |||||||||
Sbjct 964854 AGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACATC 964913
Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251
|| ||||| || || | | ||||| ||||| || || ||||| ||||| || ||
Sbjct 964914 AAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGC- 964972
Query 63252 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310
||| || || |||| | || || ||||| || || || ||||| || || || || ||
Sbjct 964973 ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAA 965032
Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370
| | | |||| | ||||| || |||||||| ||||| | | || || ||||| ||
Sbjct 965033 GTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATT 965092
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|| || || || | || | || ||||| || || ||||||| ||| || | || |||
Sbjct 965093 GCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACC 965152
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
||||| ||||||| || || | || || ||||| | | | |||| |||| ||
Sbjct 965153 ATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTGC 965212
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
|| ||| || || ||||| ||||||||| | || ||| |||| | |||||||| ||
Sbjct 965213 TACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAAT 965272
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610
|| || ||||| ||||| ||||| || || || ||||| || | ||| | | |
Sbjct 965273 GCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTT 965332
Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670
||| || || || || | || ||||| || || || ||||| || ||||| || || ||
Sbjct 965333 AGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTT 965392
Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730
||| |||||||| |||| |||||||| | | || ||||| || || || | ||| |
Sbjct 965393 GTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAG 965452
Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790
||||||||| || | ||| | | || || ||||||| |||||| || || |
Sbjct 965453 CATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTAG 965512
Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850
|||||||| ||||| | ||||| ||||| || | || ||||| ||| | ||||||||
Sbjct 965513 CGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGAG 965572
Query 63851 TTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTT--GAAATAATCGGAGAAT 63906
|| | | |||| | || | ||| | |||| ||| || || || || || |
Sbjct 965573 GCGGTC--TTTGTTTGCAAGGACAAGATCTAGGGTG--TCTTGGGAGATCATGGGGGAGT 965628
Query 63907 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63966
| | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | |
Sbjct 965629 GGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACGTCACTGAACACCT 965688
Query 63967 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64026
| || || || || || |||||||| || || |||| || || || ||||||||||| |
Sbjct 965689 TCTTGGTCTCTTTATGGAGATTTGACACAGCAATTCGTGCAGCCAGGATGGCATAATCTG 965748
Query 64027 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 64086
| || | || || ||||| || || || || || || ||||||| || || || |
Sbjct 965749 GGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAGCTCCACAGTGG 965808
Query 64087 TTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 64146
| ||||| | || | ||||| || |||||||| | |||| | || || | | |
Sbjct 965809 TCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAACT 965868
Query 64147 CCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204
||| || | |||||||| | || || ||||| ||||||||||||||||||||
Sbjct 965869 CCGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 965926
>seq22773
Length=730387
Score = 122 bits (134), Expect = 1e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
||||||| || || ||||| || | ||||||||||||| || ||||| || ||| | |
Sbjct 299790 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 299849
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
|||||||||| || || |||| | || |||| || || || || ||||||||||
Sbjct 299850 AATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCAAATGGAT 299909
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
|| | |||||| || |||||||| | || |||||||| || || |||||||| || |
Sbjct 299910 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGTCTGTGGC 299969
Query 62755 TCTTATTAGA 62764
| | |||||
Sbjct 299970 GCATGTTAGA 299979
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/130 (76%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274
||| ||||||||||| ||||| || ||||| ||||| | ||| ||||| | || ||| ||
Sbjct 300723 CACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTG 300782
Query 63275 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333
||||| || || || || || |||||| || |||||| | | | |||| ||||||| |
Sbjct 300783 CTCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATG 300841
Query 63334 GTTCCAAGTA 63343
| || | |||
Sbjct 300842 GCTCGAGGTA 300851
Score = 86.0 bits (94), Expect = 8e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996
|||| || ||||||||||| || || || ||||||| || |||| ||| || || ||
Sbjct 300299 TATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCCTAGATTCTGCTGGTTG 300358
Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056
||||| | || || ||||| || || || ||| |||| ||||| || || |||| ||
Sbjct 300359 CTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGTGAC 300418
Query 63057 TCTATAATCGCTTTCCA 63073
|| ||||| || | |||
Sbjct 300419 TCAATAATGGCATACCA 300435
>seq20084
Length=15297
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
||||||| | || || ||||||||||| || || ||||||||||| ||||| || || |
Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || |||| ||||| |||||||| |||||||| || || || ||||||||||
Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820
Query 33446 C 33446
|
Sbjct 12821 C 12821
>seq19222
Length=928746
Score = 84.2 bits (92), Expect = 3e-11
Identities = 80/101 (79%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 33798 ATCT-ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGT 33856
|||| || || ||||||||||| || ||||||| ||||| || ||||| ||||||||||
Sbjct 772325 ATCTCACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGT 772266
Query 33857 CATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897
|| || || || ||||| || |||||||| | ||||||
Sbjct 772265 CAGGGTACTGTATGGGGAACATCACAAATCTTCTGGGATTT 772225
Score = 82.4 bits (90), Expect = 1e-10
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530
|||||||| |||||||| ||||||| || || ||| |||| ||||||||||| ||||
Sbjct 773673 GCTGTCATTTATCCACTGAAGAGCCCAGTCCGCTTTCCTTTTCACACAAGGCATGGTTTG 773614
Query 33531 TATGGCATTAAAGAGATAGT 33550
||||||||||| | |||||
Sbjct 773613 AATGGCATTAAATAAATAGT 773594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622744274949600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |