Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18889 663 0.0 seq22773 122 1e-22 seq20084 114 2e-20 seq19222 84.2 3e-11 >seq18889 Length=1054283 Score = 663 bits (734), Expect = 0.0 Identities = 1338/1978 (68%), Gaps = 29/1978 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| ||||||||| | || || | | ||||||| ||||| || ||||| | | Sbjct 963962 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 964021 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || |||| | | || ||||| || || || | ||||| |||||||||| ||||| Sbjct 964022 TTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCT 964081 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 964082 GCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGC 964141 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || |||||||| |||| ||| | || || || | ||||| | | || Sbjct 964142 TGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAAT 964201 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || || | || || Sbjct 964202 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCGTA 964261 Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 ||| ||||| || |||| | || ||| ||||| || || || || ||||| || Sbjct 964262 TTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTC 964321 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 || | || || || ||||| | ||| | || || |||||||| ||||||| |||| Sbjct 964322 TGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATT 964381 Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722 || || ||||| || |||||||||||| | ||| || || || || || | Sbjct 964382 CAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 964441 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 || || ||||| || || || || || || | ||| || || | || ||||| |||| Sbjct 964442 ACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 964501 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 62838 || || || ||||| || || || |||||||||||||| ||||||||||| ||| Sbjct 964502 TGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGA 964561 Query 62839 --CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGC 62893 || ||| ||||| ||||||| | ||| | ||| ||||||| | || Sbjct 964562 GGCAAGCTT---TTTGA---AATCAAAGGTGCGTTCTGGAGTAACATACATGTTGAGAGC 964615 Query 62894 AACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 62951 || || |||| ||||| |||||||| |||| | || | | ||| | | |||||| Sbjct 964616 AATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT--GTATACTCCACAATCTCA 964673 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| | ||||| || ||||| || || ||||| || || |||||||| ||||||| Sbjct 964674 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 964733 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 ||||| || || | ||| | || || || ||||| ||||||| ||||| || || | | Sbjct 964734 GCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATAC 964793 Query 63072 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATAC 63131 || || ||||||| | | || ||| | || ||| ||| |||| ||| Sbjct 964794 CACACCTGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATCGTGTGTAC 964853 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191 | || ||||| || |||||| | ||||| ||||| || ||| ||||||||| Sbjct 964854 AGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGACACATC 964913 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 || ||||| || || | | ||||| ||||| || || ||||| ||||| || || Sbjct 964914 AAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGC- 964972 Query 63252 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 ||| || || |||| | || || ||||| || || || ||||| || || || || || Sbjct 964973 ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAA 965032 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | | |||| | ||||| || |||||||| ||||| | | || || ||||| || Sbjct 965033 GTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATT 965092 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 || || || || | || | || ||||| || || ||||||| ||| || | || ||| Sbjct 965093 GCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACC 965152 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 ||||| ||||||| || || | || || ||||| | | | |||| |||| || Sbjct 965153 ATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTGC 965212 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| || || ||||| ||||||||| | || ||| |||| | |||||||| || Sbjct 965213 TACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAAT 965272 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || || ||||| ||||| ||||| || || || ||||| || | ||| | | | Sbjct 965273 GCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTT 965332 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || || || || | || ||||| || || || ||||| || ||||| || || || Sbjct 965333 AGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTT 965392 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| |||||||| |||| |||||||| | | || ||||| || || || | ||| | Sbjct 965393 GTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAG 965452 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||| || | ||| | | || || ||||||| |||||| || || | Sbjct 965453 CATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAGAGCGCTCTAG 965512 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 |||||||| ||||| | ||||| ||||| || | || ||||| ||| | |||||||| Sbjct 965513 CGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGAG 965572 Query 63851 TTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTT--GAAATAATCGGAGAAT 63906 || | | |||| | || | ||| | |||| ||| || || || || || | Sbjct 965573 GCGGTC--TTTGTTTGCAAGGACAAGATCTAGGGTG--TCTTGGGAGATCATGGGGGAGT 965628 Query 63907 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63966 | | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | | Sbjct 965629 GGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACGTCACTGAACACCT 965688 Query 63967 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64026 | || || || || || |||||||| || || |||| || || || ||||||||||| | Sbjct 965689 TCTTGGTCTCTTTATGGAGATTTGACACAGCAATTCGTGCAGCCAGGATGGCATAATCTG 965748 Query 64027 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 64086 | || | || || ||||| || || || || || || ||||||| || || || | Sbjct 965749 GGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAGCTCCACAGTGG 965808 Query 64087 TTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 64146 | ||||| | || | ||||| || |||||||| | |||| | || || | | | Sbjct 965809 TCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAACT 965868 Query 64147 CCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 ||| || | |||||||| | || || ||||| |||||||||||||||||||| Sbjct 965869 CCGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 965926 >seq22773 Length=730387 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 ||||||| || || ||||| || | ||||||||||||| || ||||| || ||| | | Sbjct 299790 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 299849 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 |||||||||| || || |||| | || |||| || || || || |||||||||| Sbjct 299850 AATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCACTTTCAAATGGAT 299909 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 || | |||||| || |||||||| | || |||||||| || || |||||||| || | Sbjct 299910 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCAATAGGTCTGTGGC 299969 Query 62755 TCTTATTAGA 62764 | | ||||| Sbjct 299970 GCATGTTAGA 299979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 ||| ||||||||||| ||||| || ||||| ||||| | ||| ||||| | || ||| || Sbjct 300723 CACACGTTTCATAAAAAGATCTGGGATCCACAGAGCAAAAAACAGATCGCGGGCTCTCTG 300782 Query 63275 TTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333 ||||| || || || || || |||||| || |||||| | | | |||| ||||||| | Sbjct 300783 CTCCTCTTTACCAGTGTTTTTCTTTAAG-TCAAGGAACTCAAACACATCAAAATGCCATG 300841 Query 63334 GTTCCAAGTA 63343 | || | ||| Sbjct 300842 GCTCGAGGTA 300851 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| || ||||||||||| || || || ||||||| || |||| ||| || || || Sbjct 300299 TATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCCTAGATTCTGCTGGTTG 300358 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| | || || ||||| || || || ||| |||| ||||| || || |||| || Sbjct 300359 CTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGTGAC 300418 Query 63057 TCTATAATCGCTTTCCA 63073 || ||||| || | ||| Sbjct 300419 TCAATAATGGCATACCA 300435 >seq20084 Length=15297 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||| | || || ||||||||||| || || ||||||||||| ||||| || || | Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||||| |||||||| |||||||| || || || |||||||||| Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGG 12820 Query 33446 C 33446 | Sbjct 12821 C 12821 >seq19222 Length=928746 Score = 84.2 bits (92), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 33798 ATCT-ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGT 33856 |||| || || ||||||||||| || ||||||| ||||| || ||||| |||||||||| Sbjct 772325 ATCTCACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGT 772266 Query 33857 CATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || || || || ||||| || |||||||| | |||||| Sbjct 772265 CAGGGTACTGTATGGGGAACATCACAAATCTTCTGGGATTT 772225 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 |||||||| |||||||| ||||||| || || ||| |||| ||||||||||| |||| Sbjct 773673 GCTGTCATTTATCCACTGAAGAGCCCAGTCCGCTTTCCTTTTCACACAAGGCATGGTTTG 773614 Query 33531 TATGGCATTAAAGAGATAGT 33550 ||||||||||| | ||||| Sbjct 773613 AATGGCATTAAATAAATAGT 773594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622744274949600