Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq10742 96.9 3e-15
seq4874 93.3 3e-14
>seq10742
Length=3397572
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/234 (70%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||||| || | || |||| || || ||||||||||| || ||||||||||| |
Sbjct 2148904 CCCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2148963
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| || | | || || | || || || ||| |||| |||| ||| ||||| |||
Sbjct 2148964 GAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGG 2149023
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| || || || || || || || |||||| | | | ||||| | |||||
Sbjct 2149024 GATACCTTCCTTATCCTGGATCTTGGC--CTTCACGTTTTCAATTGTGTCACTCGGCTCA 2149081
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
||||| ||||||||||| || ||||| || || ||||| ||||||||||||
Sbjct 2149082 ACTTCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTTG 2149135
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||||| | | ||| |||| || || ||||| |||||||| ||||||||||| |
Sbjct 2148449 CCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 2148508
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || || | || || || || |||| |||| ||||||||| |||
Sbjct 2148509 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGG 2148568
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || ||||| ||| || | | | ||||| | || |||
Sbjct 2148569 ATACCCTCTTTGTCCTGGATCTTTGC--CTTGACGTTTTCAATGGTGTCACTAGGTTCCA 2148626
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| || || ||||| || || ||||| ||||||||
Sbjct 2148627 CCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||||| || | || |||| || || ||||||||||| || ||||||||||| |
Sbjct 2148676 CCCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2148735
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| || | | || || | || || || || |||| |||| ||| || || |||
Sbjct 2148736 GAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGG 2148795
Query 16828 CACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||||||||||| ||||| ||| ||||| | | | ||||| | || ||
Sbjct 2148796 AATACCCTCTTTGTCTTGAATTTTGGCT--TTCACATTCTCAATGGTGTCACTTGGTTCA 2148853
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| || || ||||| || || ||||| ||||||||
Sbjct 2148854 ACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903
>seq4874
Length=535125
Score = 93.3 bits (102), Expect = 3e-14
Identities = 153/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| || | ||| || || || || || || ||||||||||||| | ||| | | ||
Sbjct 502015 CAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 501956
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|| | |||||||| ||| | || |||| ||| || || || | |||||| || ||
Sbjct 501955 TTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATC 501896
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || ||| || || | | | |||||||| ||||||| || | ||| |||
Sbjct 501895 TTGGATCTTGGCT--TTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATG 501838
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
||||| || || || ||||| ||||| |||||||| |||
Sbjct 501837 GTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 501799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404959341519400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |