Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10742 96.9 3e-15 seq4874 93.3 3e-14 >seq10742 Length=3397572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| || | || |||| || || ||||||||||| || ||||||||||| | Sbjct 2148904 CCCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2148963 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | || || || ||| |||| |||| ||| ||||| ||| Sbjct 2148964 GAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGG 2149023 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || || || || || || |||||| | | | ||||| | ||||| Sbjct 2149024 GATACCTTCCTTATCCTGGATCTTGGC--CTTCACGTTTTCAATTGTGTCACTCGGCTCA 2149081 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| ||||||||||| || ||||| || || ||||| |||||||||||| Sbjct 2149082 ACTTCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTTG 2149135 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | | ||| |||| || || ||||| |||||||| ||||||||||| | Sbjct 2148449 CCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 2148508 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || || | || || || || |||| |||| ||||||||| ||| Sbjct 2148509 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGG 2148568 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || ||||| ||| || | | | ||||| | || ||| Sbjct 2148569 ATACCCTCTTTGTCCTGGATCTTTGC--CTTGACGTTTTCAATGGTGTCACTAGGTTCCA 2148626 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || ||||| || || ||||| |||||||| Sbjct 2148627 CCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| || | || |||| || || ||||||||||| || ||||||||||| | Sbjct 2148676 CCCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2148735 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | || || || || |||| |||| ||| || || ||| Sbjct 2148736 GAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGG 2148795 Query 16828 CACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||||||||| ||||| ||| ||||| | | | ||||| | || || Sbjct 2148796 AATACCCTCTTTGTCTTGAATTTTGGCT--TTCACATTCTCAATGGTGTCACTTGGTTCA 2148853 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || ||||| || || ||||| |||||||| Sbjct 2148854 ACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903 >seq4874 Length=535125 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || || || || || || ||||||||||||| | ||| | | || Sbjct 502015 CAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 501956 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | |||||||| ||| | || |||| ||| || || || | |||||| || || Sbjct 501955 TTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATC 501896 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| || || | | | |||||||| ||||||| || | ||| ||| Sbjct 501895 TTGGATCTTGGCT--TTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATG 501838 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| || || || ||||| ||||| |||||||| ||| Sbjct 501837 GTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 501799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404959341519400