Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq21970 122 6e-23 seq19259 122 6e-23 seq18468 118 7e-22 seq12406 118 7e-22 seq2275 116 2e-21 seq19934 113 3e-20 seq6238 113 3e-20 seq12471 96.9 2e-15 seq25088 95.1 8e-15 seq18823 91.5 1e-13 seq18157 91.5 1e-13 seq2191 89.7 3e-13 seq1443 89.7 3e-13 seq10742 82.4 5e-11 >seq21970 Length=5753 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || | |||||||||| || |||||||| Sbjct 5109 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 5050 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5049 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5015 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 2615 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 2556 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 2555 GCCGGTATTTAGCCTTA 2539 >seq19259 Length=22469 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || | |||||||||| || |||||||| Sbjct 21330 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 21389 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 21390 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 21424 >seq18468 Length=685002 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || | |||||||||| || |||||||| Sbjct 350664 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 350605 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 350604 TCATCCATTCATGCGCGTCACTAATTAGATGATGA 350570 >seq12406 Length=108079 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || | |||||||||| || |||||||| Sbjct 28944 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 29003 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||| |||||||||||| Sbjct 29004 TCATCCATTCATGCGCGTCACTGATTAGATGACGA 29038 >seq2275 Length=118428 Score = 116 bits (128), Expect = 2e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || || | ||| || || ||||| ||||||||||| ||||| ||| |||||||| Sbjct 13871 ACCCAACCAAGTTTTTTGGTTGTGAACTGGGCGCTCAGACCCAGTTCGATTCCAAAAACG 13930 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | |||| |||||| ||||| || || | | |||||||||||| | || ||||| | Sbjct 13931 ACCGCTACATCGTCAACGGCTCCCACGAGGCCAATAAGCTGCAGGACATGCTCGACGGGT 13990 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || ||||||||||| || ||||| ||||| || || || || Sbjct 13991 TCATACGGAAATTTGTGCTGTGCTCCGAGTGCGACAACCCCGAAACTGATCT 14042 >seq19934 Length=290308 Score = 113 bits (124), Expect = 3e-20 Identities = 79/90 (88%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961 ||||||||||||||||||||||| || | |||||||||| || ||||||||| ||| Sbjct 54731 CGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGTTCATC 54672 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||||||||||||||| Sbjct 54671 CATTCATGCGCGTCACTAATTAGATGACGA 54642 >seq6238 Length=175129 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||||||| ||| || | |||||||||| || |||||||| Sbjct 2857 AAGCCCGTTCCCTTGACTGTGGTTCCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 2798 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2797 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2763 >seq12471 Length=235 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 123 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 64 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 63 GCCCATATTTAGCCTT 48 >seq25088 Length=293934 Score = 95.1 bits (104), Expect = 8e-15 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 6162 CTCTCTCT-CAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 6220 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 6221 GCCGGTATTTAGCCTTA 6237 >seq18823 Length=352929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||| |||||||| ||| | || | || ||||||| || |||||||| Sbjct 300934 AAGACCGTTCCCTCGGCTGTGGCTTCACAAGGTGGTGGATAGGGACAGTGGGAATCTCGT 300875 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||| ||||||||||||||||| Sbjct 300874 TCATCCGTTCATGTGCGGCACTAATTAGATGACGA 300840 >seq18157 Length=39583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||||||||| || | ||||||||| | ||||| || Sbjct 17111 AAGCCTGTTCCCTTGGCTGTGGTTTCGCAAGGTGATAGATAGGGACAGTAGGAATCTTGT 17052 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||| |||||||||||| Sbjct 17051 TCATCCATTCATGCACATCACTGATTAGATGACGA 17017 >seq2191 Length=1655292 Score = 89.7 bits (98), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 9/95 (9%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||||||||||||||||||| || | |||||||||| || | |||||| Sbjct 674763 AAGCTCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGACTCTCGT 674704 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||| Sbjct 674703 TCATCCATTCAT----ATCACTAATTAGATGACGA 674673 >seq1443 Length=1068114 Score = 89.7 bits (98), Expect = 3e-13 Identities = 75/92 (82%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| ||| ||||||||||| || | |||||||||| || ||||||| Sbjct 896618 AAGCCCGTTCCTTTGATTGTGGTTTCGCAAGGTGGTAGATAGGGACACCGGGGATCTCGT 896677 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| |||||| ||||||||||||| |||| Sbjct 896678 TCATCCATTCATGTGCGTCACTAATTACATGA 896709 >seq10742 Length=3397572 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || || |||||||| |||| |||||| || || ||| ||||||||||| ||||| || Sbjct 2148446 TTTCCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCT 2148505 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | || | || || | || || || || || || || | ||||| || | Sbjct 2148506 GAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGA 2148565 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| || ||||||||| || ||| ||| || || | | || || | | ||| Sbjct 2148566 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCC 2148625 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || |||| ||| || || || |||||||| Sbjct 2148626 ACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334840818675860