Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq21970 122 6e-23
seq19259 122 6e-23
seq18468 118 7e-22
seq12406 118 7e-22
seq2275 116 2e-21
seq19934 113 3e-20
seq6238 113 3e-20
seq12471 96.9 2e-15
seq25088 95.1 8e-15
seq18823 91.5 1e-13
seq18157 91.5 1e-13
seq2191 89.7 3e-13
seq1443 89.7 3e-13
seq10742 82.4 5e-11
>seq21970
Length=5753
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||| || | |||||||||| || ||||||||
Sbjct 5109 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 5050
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 5049 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5015
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2615 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 2556
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 2555 GCCGGTATTTAGCCTTA 2539
>seq19259
Length=22469
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||| || | |||||||||| || ||||||||
Sbjct 21330 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 21389
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 21390 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 21424
>seq18468
Length=685002
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||| || | |||||||||| || ||||||||
Sbjct 350664 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 350605
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||| ||
Sbjct 350604 TCATCCATTCATGCGCGTCACTAATTAGATGATGA 350570
>seq12406
Length=108079
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||| || | |||||||||| || ||||||||
Sbjct 28944 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 29003
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||| ||||||||||||
Sbjct 29004 TCATCCATTCATGCGCGTCACTGATTAGATGACGA 29038
>seq2275
Length=118428
Score = 116 bits (128), Expect = 2e-21
Identities = 129/172 (75%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378
|||| || || | ||| || || ||||| ||||||||||| ||||| ||| ||||||||
Sbjct 13871 ACCCAACCAAGTTTTTTGGTTGTGAACTGGGCGCTCAGACCCAGTTCGATTCCAAAAACG 13930
Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438
| |||| |||||| ||||| || || | | |||||||||||| | || ||||| |
Sbjct 13931 ACCGCTACATCGTCAACGGCTCCCACGAGGCCAATAAGCTGCAGGACATGCTCGACGGGT 13990
Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
| || || || ||||||||||| || ||||| ||||| || || || ||
Sbjct 13991 TCATACGGAAATTTGTGCTGTGCTCCGAGTGCGACAACCCCGAAACTGATCT 14042
>seq19934
Length=290308
Score = 113 bits (124), Expect = 3e-20
Identities = 79/90 (88%), Gaps = 5/90 (6%)
Strand=Plus/Minus
Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961
||||||||||||||||||||||| || | |||||||||| || ||||||||| |||
Sbjct 54731 CGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGTTCATC 54672
Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991
| ||||||||||||||||||||||||||||
Sbjct 54671 CATTCATGCGCGTCACTAATTAGATGACGA 54642
>seq6238
Length=175129
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||| |||||||| ||| || | |||||||||| || ||||||||
Sbjct 2857 AAGCCCGTTCCCTTGACTGTGGTTCCGCAAGGTGGTAGATAGGGACAGTGGGAATCTCGT 2798
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 2797 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2763
>seq12471
Length=235
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 123 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 64
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 63 GCCCATATTTAGCCTT 48
>seq25088
Length=293934
Score = 95.1 bits (104), Expect = 8e-15
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 6162 CTCTCTCT-CAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 6220
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 6221 GCCGGTATTTAGCCTTA 6237
>seq18823
Length=352929
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||| ||||||||| |||||||| ||| | || | || ||||||| || ||||||||
Sbjct 300934 AAGACCGTTCCCTCGGCTGTGGCTTCACAAGGTGGTGGATAGGGACAGTGGGAATCTCGT 300875
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| ||| |||||||||||||||||
Sbjct 300874 TCATCCGTTCATGTGCGGCACTAATTAGATGACGA 300840
>seq18157
Length=39583
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||| |||||||||||||||||||||| || | ||||||||| | ||||| ||
Sbjct 17111 AAGCCTGTTCCCTTGGCTGTGGTTTCGCAAGGTGATAGATAGGGACAGTAGGAATCTTGT 17052
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| | ||||| ||||||||||||
Sbjct 17051 TCATCCATTCATGCACATCACTGATTAGATGACGA 17017
>seq2191
Length=1655292
Score = 89.7 bits (98), Expect = 3e-13
Identities = 77/95 (81%), Gaps = 9/95 (9%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||| ||||||||||||||||||||||| || | |||||||||| || | ||||||
Sbjct 674763 AAGCTCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGACAGTGGGACTCTCGT 674704
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||
Sbjct 674703 TCATCCATTCAT----ATCACTAATTAGATGACGA 674673
>seq1443
Length=1068114
Score = 89.7 bits (98), Expect = 3e-13
Identities = 75/92 (82%), Gaps = 5/92 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||| ||| ||||||||||| || | |||||||||| || |||||||
Sbjct 896618 AAGCCCGTTCCTTTGATTGTGGTTTCGCAAGGTGGTAGATAGGGACACCGGGGATCTCGT 896677
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
| |||| |||||| ||||||||||||| ||||
Sbjct 896678 TCATCCATTCATGTGCGTCACTAATTACATGA 896709
>seq10742
Length=3397572
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
|| || |||||||| |||| |||||| || || ||| ||||||||||| ||||| ||
Sbjct 2148446 TTTCCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCT 2148505
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
|| | || | || || | || || || || || || || | ||||| || |
Sbjct 2148506 GAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGA 2148565
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|||| || ||||||||| || ||| ||| || || | | || || | | |||
Sbjct 2148566 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCC 2148625
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || || || || |||| ||| || || || ||||||||
Sbjct 2148626 ACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334840818675860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |