Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10742 127 2e-24 seq18889 123 2e-23 seq4874 122 7e-23 >seq10742 Length=3397572 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || |||||||| || | || || || || ||||| | || |||||| | | Sbjct 2148676 GATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAG 2148617 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | |||| ||| || || ||||| |||||||| || || || || Sbjct 2148616 TGACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCA 2148557 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || || || || || ||| | || ||| |||||| |||| || ||||| Sbjct 2148556 ACAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAA 2148497 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||| ||||||||| | || || || |||||||| | ||||| Sbjct 2148496 CATTCAAAAGGAATCCACCCTCCACTTGGTGCTGCGATTGAGAGGAGG 2148449 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || |||||||| || | || || || || ||||| | || || ||| | | Sbjct 2148904 GATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAG 2148845 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 2148844 TGACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAAGAGGGTATTCCTCCTGATCA 2148785 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || || || || ||| |||| ||| |||||| |||| || ||||| Sbjct 2148784 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAA 2148725 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 2148724 CATCCAGAAGGAGTCCACC 2148706 >seq18889 Length=1054283 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 129688 TTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACA 129747 |||| | ||| |||||||| || |||||||| ||| | |||| | ||||| ||| Sbjct 964608 TTGAGAGCAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACA 964667 Query 129748 ATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATG 129807 || || | |||||| ||||| ||| ||||||||||||| || || ||||| ||| || Sbjct 964668 ATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTG 964727 Query 129808 TTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || || ||||||||||||| |||||| || || |||||||| Sbjct 964728 TTACAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTC 964768 >seq4874 Length=535125 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || ||||||| || ||||| ||| Sbjct 502715 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGT 502774 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| || ||||| Sbjct 502775 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502834 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| |||| || |||||| Sbjct 502835 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 502894 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||||||||| | ||| | || |||| Sbjct 502895 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCG 502929 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || | ||||| || ||||| ||| Sbjct 502487 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATTACTCTGGAGGTGGAGCCCAGT 502546 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || |||||||| || ||||| || ||||| Sbjct 502547 GACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 502606 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || |||||||| ||| | || ||| ||||||| ||||||| |||||| Sbjct 502607 CAGAGGCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 502666 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||||||| | ||| | || |||| || | || ||| Sbjct 502667 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGT 502714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419594691763900