Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq10742 172 1e-37
seq4874 156 8e-33
seq15285 118 2e-21
seq20084 96.9 6e-15
seq12514 86.0 1e-11
seq18279 84.2 4e-11
>seq10742
Length=3397572
Score = 172 bits (190), Expect = 1e-37
Identities = 178/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288
|| |||||||| | | |||| |||||||| || ||||| || ||||| ||||| ||
Sbjct 2148443 TAGTTTCCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAG 2148502
Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348
|| ||||| || | |||||||| | |||||| || ||||| || || || ||||||||
Sbjct 2148503 TCTGAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCA 2148562
Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408
|| || || || || ||||| || ||||||||||||||| || |||||||| | |
Sbjct 2148563 GGAGGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGT 2148622
Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| |||||||| || || || |||||||| || || ||||||||
Sbjct 2148623 TCCACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
Score = 163 bits (180), Expect = 5e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | || || | |||| ||| || |||||||| || |||||||| || || |||
Sbjct 2148905 CCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2148964
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||||| |||||| || || || || || || || ||||| || ||
Sbjct 2148965 AGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 2149024
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||| || || ||||| ||||| ||| || || ||||| | || |||
Sbjct 2149025 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 2149084
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467
||||| ||||||||||| || || |||||||| || || ||||||||| ||||
Sbjct 2149085 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTTGCT 2149137
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | || || | |||| ||| || |||||||| || |||||||| || || |||
Sbjct 2148677 CCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2148736
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||||| |||||| || ||||| || || || || || || || |||
Sbjct 2148737 AGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGA 2148796
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||||||||| || || || || ||| |||||||| || ||| ||
Sbjct 2148797 ATACCCTCTTTGTCTTGAATTTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAACC 2148856
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| |||||||| || || || |||||||| || || ||||||||
Sbjct 2148857 TCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903
>seq4874
Length=535125
Score = 156 bits (172), Expect = 8e-33
Identities = 160/208 (77%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || || || ||||| |||||||| || |||||||| || | |||||||| |
Sbjct 502238 CAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 502179
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| |||||||| || || || || || || || ||||||||||||||||| || |
Sbjct 502178 GCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 502119
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| ||||| ||| || |||||||| | || || |||| |||||||| || |
Sbjct 502118 TCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCC 502059
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||| || || || ||||||||
Sbjct 502058 CAGTGAGGGTTTTCACAAAGATCTGCAT 502031
Score = 156 bits (172), Expect = 8e-33
Identities = 160/208 (77%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || || || ||||| |||||||| || |||||||| || | |||||||| |
Sbjct 502466 CAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 502407
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| |||||||| || || || || || || || ||||||||||||||||| || |
Sbjct 502406 GCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 502347
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| ||||| ||| || |||||||| | || || |||| |||||||| || |
Sbjct 502346 TCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCC 502287
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||| || || || ||||||||
Sbjct 502286 CAGTGAGGGTTTTCACAAAGATCTGCAT 502259
Score = 150 bits (166), Expect = 3e-31
Identities = 159/208 (76%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| ||||| |||||||| || |||||||| || | |||||||| |
Sbjct 502694 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 502635
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| |||||||| || || || || || || || ||||||||||||||||| || |
Sbjct 502634 GCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 502575
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| ||||| ||| || || ||||| | || || |||| || ||||| || |
Sbjct 502574 TCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGTCTTCC 502515
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||| || || || ||||||||
Sbjct 502514 CAGTGAGGGTTTTCACAAAGATCTGCAT 502487
Score = 150 bits (166), Expect = 3e-31
Identities = 159/208 (76%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| ||||| |||||||| || || ||||| || | |||||||| |
Sbjct 502922 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAA 502863
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| ||||| || || || || || || || || ||||||||||||||||| || |
Sbjct 502862 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 502803
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| ||||| ||| || |||||||| | || || |||| |||||||| || |
Sbjct 502802 TCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCC 502743
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||| || || || ||||||||
Sbjct 502742 CAGTGAGGGTTTTCACAAAGATCTGCAT 502715
>seq15285
Length=216
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 268430 TTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATC 268489
|||||| | | |||||||| |||||||| || || ||| ||||||| ||| ||| |
Sbjct 216 TTGCACCCATAAATGCCATACGCCTCACGATAATTGACGGTGATCCAGTAGGCATACAAC 157
Query 268490 TTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCT 268549
|| ||||||||||| || |||||| | |||||||||||| ||| || || ||||||
Sbjct 156 TTCGCAACTGCGTAAGGGCTACGTGGGTAGAAGGGCGTCGTTTCCTTCTGGGGAATTTCT 97
Query 268550 CGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGA 268609
| || |||| ||||||| || || || || || |||||| | || | || | |
Sbjct 96 TGCACGAGGCCATAGAGCTCTGACGTGGAAGCCTGATAGAACCTGGTCTTCTTGGCCAAG 37
Query 268610 CCGCAGATTCGGATTGCCTCGAG 268632
|| |||||||||| || || ||
Sbjct 36 CCCAAGATTCGGATGGCTTCCAG 14
>seq20084
Length=15297
Score = 96.9 bits (106), Expect = 6e-15
Identities = 89/111 (80%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 10261 CCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGC 10320
|||||||||||||||| | |||||||| ||| ||| |||||||| || || || ||
Sbjct 12701 CCTCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 12760
Query 10321 GCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCAC 10369
|||||||||||||||| |||||| || |||| |||||| ||||||||
Sbjct 12761 TCAGCCAGAAAATGGCGGCGAACGATCCAGAGA--AGAAGATCCCCTCCAC 12809
>seq12514
Length=456182
Score = 86.0 bits (94), Expect = 1e-11
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510
||||||||||| |||||||||||| ||||| || ||||||| || |||||||||||
Sbjct 162786 AGAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 162845
Query 84511 CGAGCCCCACATCGGGC 84527
|||||||||| | ||||
Sbjct 162846 CGAGCCCCACGTTGGGC 162862
>seq18279
Length=91511
Score = 84.2 bits (92), Expect = 4e-11
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416
|| ||||| || || ||||| ||||| || |||||||||||| ||| | || || ||
Sbjct 2487 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC-GCTGGGCTCGACCTC 2545
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || |||||||| ||||| ||||| ||||||||
Sbjct 2546 GAGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 2590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921322181503200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |