Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq10742 116 3e-21 seq4874 109 5e-19 >seq10742 Length=3397572 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| |||||||||||||| || | || ||| ||||||||| || |||||| Sbjct 2148479 GTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTCAAGCTGCTTACCA 2148538 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||||||||| ||||| || || |||||||| |||||| || Sbjct 2148539 GCGAAAATCAGCCTCTGTTGGTCAGGAGGGATACCCTCTTTGTCCTGGATCTTTGCCTTG 2148598 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| | | ||| || |||| || | || || || ||||| || Sbjct 2148599 ACGTTTTCAATGGTGTCACTAGGTTCCACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTC 2148658 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2148659 TTAACAAAGATCTGCAT 2148675 >seq4874 Length=535125 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | ||||||||||| || |||||||| ||| Sbjct 502032 ATACCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCG 501973 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| || || || Sbjct 501972 GAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 501913 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||| ||| | | |||| |||||| ||| || Sbjct 501912 GGAATGCCCTCCTTATCTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCC 501853 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| || || ||||| ||||| |||||||| Sbjct 501852 ACCTCAAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 501803 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | ||||||||||| || |||||||| ||| Sbjct 502260 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCG 502201 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| || || || ||| |||| || | ||| || || || Sbjct 502200 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGG 502141 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | ||||| |||||| ||| || Sbjct 502140 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCC 502081 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || || ||||| ||||| |||||||| Sbjct 502080 ACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | ||||||||||| || |||||||| ||| Sbjct 502488 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCG 502429 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| || || || ||| |||| || | ||| || || || Sbjct 502428 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGG 502369 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | ||||| |||||| ||| || Sbjct 502368 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCC 502309 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || || ||||| ||||| |||||||| Sbjct 502308 ACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || |||||||| || |||||||| ||| Sbjct 502716 ATACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 502657 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| || || || ||| |||| || | ||| || || || Sbjct 502656 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGG 502597 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | ||||| ||||| ||| || Sbjct 502596 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCC 502537 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || || ||||| ||||| |||||||| Sbjct 502536 ACCTCCAGAGTAATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || | || || ||||||||| || || || Sbjct 502911 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCG 502852 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 502851 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 502792 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| || | || || || || || ||| Sbjct 502791 ACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTT 502732 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 502731 TTCACAAAGATCTGCAT 502715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420000962688720