Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18889 259 9e-64 seq20084 105 1e-17 >seq18889 Length=1054283 Score = 259 bits (286), Expect = 9e-64 Identities = 717/1087 (66%), Gaps = 32/1087 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || | |||||||||||| ||||| || | ||| ||||| ||||||| || | Sbjct 964049 GTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGC 964108 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||||| ||| ||||||| ||||| ||||| ||| || || ||||| || | || Sbjct 964109 TTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATAGGGGCCAA 964168 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || ||| ||||||||||| ||||| | || | ||| ||||||||||| Sbjct 964169 CAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAGTCCCA 964228 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | | | ||| ||| |||||||||| | ||||| | ||| | || Sbjct 964229 GAGCTCAGTGGGCACCT----TTT-----CCCACATGTCGTATTGCAGAATGCCCCTACT 964279 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || ||| ||| ||| ||| || || ||||| | |||| || ||||| | Sbjct 964280 CACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGCTTGC 964339 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 || ||||| || ||||||||||| || |||||| | |||| | || || ||| | Sbjct 964340 CTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCA-GCAGCTGGGCTT-CA 964397 Query 244450 GCAGGTG-AAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | | | || |||| | ||| | |||||| | || || || |||||||| ||||| Sbjct 964398 GAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCGATC 964457 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 || || || ||||| |||||||| || | ||||| || || ||||| |||| | Sbjct 964458 CCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAATG 964517 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 || || | ||| ||||| || | || | ||| ||| ||| | || Sbjct 964518 TCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAA 964577 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 || | || | | || ||| | | ||| || |||||| || | | Sbjct 964578 TCAAAG--GT-GCGTTC--------TGGAG----TAACATACATGTTGAGAGCAATTGAG 964622 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||| |||||||| || || || | | || |||| |||||||| ||||| | | Sbjct 964623 GCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAG 964682 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 |||||||| ||||||||||||| | ||| || || ||| ||| ||||| || ||| Sbjct 964683 TTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTG 964742 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || | |||| | || || || || ||| | | | || | | ||| | | | Sbjct 964743 TACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCACACCTGC 964802 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCT-TGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 |||||||||| || || || | ||||| || || || |||||||| ||| Sbjct 964803 TGAGCCTTGACCACCC-GCTTCACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTC 964861 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCC 244985 ||||| ||||| ||| || | || |||||| | | ||| ||||| | | || Sbjct 964862 AAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACT-CACTGGGACACATCAAAGACC 964920 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | || | || |||| |||||| ||||| |||||||| ||||| | ||||| Sbjct 964921 AGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGA 964980 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | | ||||||||| || |||||||||||| ||||||| | ||||||||| | Sbjct 964981 GGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAAGTCAAACA 965040 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || | |||||| ||||||| ||| | || | ||| || || || || ||||| || | Sbjct 965041 CATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTT 965100 Query 245166 GGTCCAC 245172 ||||||| Sbjct 965101 GGTCCAC 965107 >seq20084 Length=15297 Score = 105 bits (116), Expect = 1e-17 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || ||||| ||||||||||| || | |||||| |||| |||| Sbjct 12826 TGGTGGCCTTTGCTGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCCGCCATTTTCT 12767 Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | ||| | |||||||||||| || ||||| |||||||| |||||| | Sbjct 12766 GGCTGAAGAAACGAGGCCT-GATGCCCGGACTGACTTTCTCCAACGAACTTATCAGCCGC 12708 Query 42825 GACGAGG 42831 ||||||| Sbjct 12707 GACGAGG 12701 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||||| ||||||||||| ||||||||||||||||| || |||||||| || || Sbjct 13225 TTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTATGGATTCCAGATCGCAATG 13166 Query 42537 GAGAACGTGCACTCTGAGGTGTAC 42560 |||||| | ||||||||| ||||| Sbjct 13165 GAGAACATCCACTCTGAGATGTAC 13142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944031581505600