Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 259 9e-64
seq20084 105 1e-17
>seq18889
Length=1054283
Score = 259 bits (286), Expect = 9e-64
Identities = 717/1087 (66%), Gaps = 32/1087 (3%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || | |||||||||||| ||||| || | ||| ||||| ||||||| || |
Sbjct 964049 GTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGC 964108
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
|||||| ||| ||||||| ||||| ||||| ||| || || ||||| || | ||
Sbjct 964109 TTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATAGGGGCCAA 964168
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269
|| ||| ||||||||||| ||||| | || | ||| |||||||||||
Sbjct 964169 CAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAGTCCCA 964228
Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
| | | | | ||| ||| |||||||||| | ||||| | ||| | ||
Sbjct 964229 GAGCTCAGTGGGCACCT----TTT-----CCCACATGTCGTATTGCAGAATGCCCCTACT 964279
Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389
|| ||| ||| ||| ||| || || ||||| | |||| || ||||| |
Sbjct 964280 CACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGCTTGC 964339
Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449
|| ||||| || ||||||||||| || |||||| | |||| | || || ||| |
Sbjct 964340 CTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCA-GCAGCTGGGCTT-CA 964397
Query 244450 GCAGGTG-AAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507
| | | || |||| | ||| | |||||| | || || || |||||||| |||||
Sbjct 964398 GAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCGATC 964457
Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567
|| || || ||||| |||||||| || | ||||| || || ||||| |||| |
Sbjct 964458 CCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAATG 964517
Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627
|| || | ||| ||||| || | || | ||| ||| ||| | ||
Sbjct 964518 TCAATGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAA 964577
Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687
|| | || | | || ||| | | ||| || |||||| || | |
Sbjct 964578 TCAAAG--GT-GCGTTC--------TGGAG----TAACATACATGTTGAGAGCAATTGAG 964622
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|||| ||| |||||||| || || || | | || |||| |||||||| ||||| | |
Sbjct 964623 GCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAG 964682
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|||||||| ||||||||||||| | ||| || || ||| ||| ||||| || |||
Sbjct 964683 TTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTG 964742
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
|| | |||| | || || || || ||| | | | || | | ||| | | |
Sbjct 964743 TACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCACACCTGC 964802
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCT-TGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926
|||||||||| || || || | ||||| || || || |||||||| |||
Sbjct 964803 TGAGCCTTGACCACCC-GCTTCACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTC 964861
Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCC 244985
||||| ||||| ||| || | || |||||| | | ||| ||||| | | ||
Sbjct 964862 AAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACT-CACTGGGACACATCAAAGACC 964920
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| || | || | || |||| |||||| ||||| |||||||| ||||| | |||||
Sbjct 964921 AGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGA 964980
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
|||| | | ||||||||| || |||||||||||| ||||||| | ||||||||| |
Sbjct 964981 GGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAAGTCAAACA 965040
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
| || | |||||| ||||||| ||| | || | ||| || || || || ||||| || |
Sbjct 965041 CATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTT 965100
Query 245166 GGTCCAC 245172
|||||||
Sbjct 965101 GGTCCAC 965107
>seq20084
Length=15297
Score = 105 bits (116), Expect = 1e-17
Identities = 101/127 (80%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| | || || ||||| ||||||||||| || | |||||| |||| ||||
Sbjct 12826 TGGTGGCCTTTGCTGCTGTGGAGGGGATCTTCTTCTCTGGATCGTTCGCCGCCATTTTCT 12767
Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| | ||| | |||||||||||| || ||||| |||||||| |||||| |
Sbjct 12766 GGCTGAAGAAACGAGGCCT-GATGCCCGGACTGACTTTCTCCAACGAACTTATCAGCCGC 12708
Query 42825 GACGAGG 42831
|||||||
Sbjct 12707 GACGAGG 12701
Score = 84.2 bits (92), Expect = 4e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
|||||| ||||||||||| ||||||||||||||||| || |||||||| || ||
Sbjct 13225 TTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTATGGATTCCAGATCGCAATG 13166
Query 42537 GAGAACGTGCACTCTGAGGTGTAC 42560
|||||| | ||||||||| |||||
Sbjct 13165 GAGAACATCCACTCTGAGATGTAC 13142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944031581505600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |