Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 136 9e-27
seq10742 127 5e-24
seq15285 104 6e-17
seq18279 89.7 1e-12
>seq4874
Length=535125
Score = 136 bits (150), Expect = 9e-27
Identities = 160/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| || ||||| | ||| |||||| ||||| || ||||||| ||| ||||| || |||
Sbjct 502698 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502639
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
|| | || || || ||||||||||| | ||| ||| |||||| || ||||| ||
Sbjct 502638 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTG 502582
Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438
|||||||| || || ||||||||||| |||| || || | || || || || || ||
Sbjct 502581 TCCTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATG 502522
Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| || || || || || || ||||||||
Sbjct 502521 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487
Score = 132 bits (146), Expect = 1e-25
Identities = 147/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| ||||| || ||||||| ||| ||||| || ||||| | || || || |||||
Sbjct 502222 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAA 502163
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||||| | ||| ||| |||||| || ||||| || |||||||| || || |||||
Sbjct 502162 GATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 502106
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | || || | || || || || ||||| |||||||| || || || ||
Sbjct 502105 GTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTT 502046
Query 288459 GACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 502045 CACAAAGATCTGCAT 502031
Score = 132 bits (146), Expect = 1e-25
Identities = 147/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| ||||| || ||||||| ||| ||||| || ||||| | || || || |||||
Sbjct 502450 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAA 502391
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||||| | ||| ||| |||||| || ||||| || |||||||| || || |||||
Sbjct 502390 GATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 502334
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | || || | || || || || ||||| |||||||| || || || ||
Sbjct 502333 GTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTT 502274
Query 288459 GACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 502273 CACAAAGATCTGCAT 502259
Score = 129 bits (142), Expect = 1e-24
Identities = 169/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| | || | || || ||||| | ||| |||||| ||||| || |||||
Sbjct 502944 TGGCCACCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 502885
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||| ||||| || ||||| | || || || || |||||||| | ||| ||| |||
Sbjct 502884 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGA---TCT 502828
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || ||||| || |||||||| || || ||||||||||| || | || || |
Sbjct 502827 GGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGC 502768
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| |||||||| || || || || || || ||||||||
Sbjct 502767 TCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715
>seq10742
Length=3397572
Score = 127 bits (140), Expect = 5e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | ||| ||||| || ||||||| || || || || ||
Sbjct 2148941 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAA 2149000
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | ||| || | ||||| ||||| ||||||||||| || || |||||||||
Sbjct 2149001 ATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTT 2149060
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || |||| || ||||| | ||||| || || || ||||| ||||| ||
Sbjct 2149061 TCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACA 2149120
Query 288463 AATATCTGCATTATG 288477
|| ||||||||| ||
Sbjct 2149121 AAGATCTGCATTTTG 2149135
>seq15285
Length=216
Score = 104 bits (114), Expect = 6e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 72427 CGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATC 72486
|||||||| | ||||| |||||||||||||| |||| ||||| || || || || |
Sbjct 72 CGTCAGAGCTCTATGGCCTCGTGCAAGAAATTCCCCAGAAGGAAACGACGCCCTTCTACC 131
Query 72487 CTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTG 72546
| || |||||||||| ||||| |||||||| || || |||||| ||||| ||||
Sbjct 132 CACGTAGCCCTTACGCAGTTGCGAAGTTGTATGCCTACTGGATCACCGTCAATTATCGTG 191
Query 72547 AGTCGTATAACATGTATGTATGCAA 72571
|| ||||| ||| |||| |||||
Sbjct 192 AGGCGTATGGCATTTATGGGTGCAA 216
>seq18279
Length=91511
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
|| || ||||||||||| || || ||||| || || || | ||||| | || || |||
Sbjct 2487 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 2546
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| |||||||| || |||||||| ||||| ||||||||
Sbjct 2547 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 2590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179260520768680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |