Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4874 136 9e-27 seq10742 127 5e-24 seq15285 104 6e-17 seq18279 89.7 1e-12 >seq4874 Length=535125 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| |||||| ||||| || ||||||| ||| ||||| || ||| Sbjct 502698 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502639 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || ||||||||||| | ||| ||| |||||| || ||||| || Sbjct 502638 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTG 502582 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || ||||||||||| |||| || || | || || || || || || Sbjct 502581 TCCTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATG 502522 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || || || || || |||||||| Sbjct 502521 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| ||| ||||| || ||||| | || || || ||||| Sbjct 502222 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAA 502163 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| ||| |||||| || ||||| || |||||||| || || ||||| Sbjct 502162 GATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 502106 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || || | || || || || ||||| |||||||| || || || || Sbjct 502105 GTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTT 502046 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 502045 CACAAAGATCTGCAT 502031 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| ||| ||||| || ||||| | || || || ||||| Sbjct 502450 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAA 502391 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| ||| |||||| || ||||| || |||||||| || || ||||| Sbjct 502390 GATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC 502334 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || || | || || || || ||||| |||||||| || || || || Sbjct 502333 GTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTT 502274 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 502273 CACAAAGATCTGCAT 502259 Score = 129 bits (142), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| | || | || || ||||| | ||| |||||| ||||| || ||||| Sbjct 502944 TGGCCACCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 502885 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || ||||| | || || || || |||||||| | ||| ||| ||| Sbjct 502884 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGA---TCT 502828 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||| || |||||||| || || ||||||||||| || | || || | Sbjct 502827 GGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGC 502768 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| |||||||| || || || || || || |||||||| Sbjct 502767 TCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715 >seq10742 Length=3397572 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || ||||||| || || || || || Sbjct 2148941 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAA 2149000 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| ||||| ||||||||||| || || ||||||||| Sbjct 2149001 ATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTT 2149060 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| || ||||| | ||||| || || || ||||| ||||| || Sbjct 2149061 TCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACA 2149120 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 2149121 AAGATCTGCATTTTG 2149135 >seq15285 Length=216 Score = 104 bits (114), Expect = 6e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 72427 CGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATC 72486 |||||||| | ||||| |||||||||||||| |||| ||||| || || || || | Sbjct 72 CGTCAGAGCTCTATGGCCTCGTGCAAGAAATTCCCCAGAAGGAAACGACGCCCTTCTACC 131 Query 72487 CTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTG 72546 | || |||||||||| ||||| |||||||| || || |||||| ||||| |||| Sbjct 132 CACGTAGCCCTTACGCAGTTGCGAAGTTGTATGCCTACTGGATCACCGTCAATTATCGTG 191 Query 72547 AGTCGTATAACATGTATGTATGCAA 72571 || ||||| ||| |||| ||||| Sbjct 192 AGGCGTATGGCATTTATGGGTGCAA 216 >seq18279 Length=91511 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || ||||||||||| || || ||||| || || || | ||||| | || || ||| Sbjct 2487 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 2546 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct 2547 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 2590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179260520768680