Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq4874 131 2e-25
seq10742 125 7e-24
seq18889 89.7 5e-13
>seq4874
Length=535125
Score = 131 bits (144), Expect = 2e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || |||||||| || |||||||| || | || |||||| | |||
Sbjct 502926 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 502867
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|||||||||||||||||| | || |||| |||||| || || ||||| ||||| || ||
Sbjct 502866 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502807
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | || |||| || ||||| || | ||| | ||||
Sbjct 502806 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502747
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | ||||| || || || |||||
Sbjct 502746 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || |||||||| || |||||||| || | || |||||| | |||
Sbjct 502014 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 501955
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|||||||| ||||| ||| | || |||| |||||| ||||| ||||| || || || |||
Sbjct 501954 TCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTATCT 501895
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| ||| | || || | || ||||| || | || | |||
Sbjct 501894 TGGA-TCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATGGT 501836
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| || | ||||| || || || ||||| ||
Sbjct 501835 TTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 501800
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || |||||||| || |||||||| || | || |||||| | |||
Sbjct 502242 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502183
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| | || |||| |||||| || || ||||| ||||| || ||
Sbjct 502182 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502123
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | || |||| || ||||| || | ||| | ||||
Sbjct 502122 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502063
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | ||||| || || || |||||
Sbjct 502062 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || |||||||| || |||||||| || | || |||||| | |||
Sbjct 502470 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502411
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| | || |||| |||||| || || ||||| ||||| || ||
Sbjct 502410 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502351
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | || |||| || ||||| || | ||| | ||||
Sbjct 502350 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 502291
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | ||||| || || || |||||
Sbjct 502290 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || |||||||| || |||||||| || | || |||||| | |||
Sbjct 502698 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 502639
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| | || |||| |||||| || || ||||| ||||| || ||
Sbjct 502638 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 502579
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | || |||| || ||||| || | ||| | ||||
Sbjct 502578 TGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGTC 502519
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | ||||| || || || |||||
Sbjct 502518 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487
>seq10742
Length=3397572
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | ||||| ||||| | || | || ||||| |||||||||||||| |||| |
Sbjct 2148449 CCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCTGAG 2148508
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| | |||||||||||||| || || |||| |||| ||| ||||| |||||
Sbjct 2148509 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCAGGAGGG 2148568
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || ||||| || || || ||| ||| || || | || |||| | |||||
Sbjct 2148569 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGTTCCACC 2148628
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | |||||| || |||| || || || || || |||||
Sbjct 2148629 TCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675
>seq18889
Length=1054283
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646
|| |||||||| || ||||| | ||| || || | || | |||||| || | ||||
Sbjct 964620 GAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCAC 964679
Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706
|| ||||||||| |||||||||| || | ||| || || |||| || || |||
Sbjct 964680 AAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCT 964739
Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTC 154735
|||||||| ||||| || || ||||||||
Sbjct 964740 TTGTACAACATGTAAGGTGTTCCCGTTTC 964768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499482040706400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |