Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 132 5e-26
seq4874 100 3e-16
>seq18889
Length=1054283
Score = 132 bits (146), Expect = 5e-26
Identities = 494/758 (65%), Gaps = 30/758 (4%)
Strand=Plus/Plus
Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGC-GCCTCAG 146102
||| |||| | |||| |||| || | ||||||||| || | || || | || | |
Sbjct 964029 AGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTG 964088
Query 146103 ATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGT 146162
|| | |||||||||| | | |||| ||||| ||||| || ||||| ||||| || |
Sbjct 964089 -TAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGA 964147
Query 146163 AGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTC 146222
|| || ||||| |||| || || ||| ||||| |||||| | |||||| ||
Sbjct 964148 GGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTC 964207
Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279
| | || || ||| | ||| | | || ||||| | | | |||||||
Sbjct 964208 CTTAAGCAGCTT---CCAGTCCCAGA---GCTCAGTGGGCACCTTTTCCCACATGTCGTA 964261
Query 146280 ATGCATAGTGCCGCGGAACAGGGGGCTATTCTCG-TACGATTCATAAGGACCGTCGATCT 146338
|||| | |||| | || ||| | || | || | |||||||| ||||| | |
Sbjct 964262 TTGCAGAATGCCCCTACTCACTGGGG-AGCCTGGGTATGTCTCATAAGGCCCGTCCTTTT 964320
Query 146339 TGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGT 146398
|||| |||||||| || ||||| || | | |||| ||||| || |||| | |
Sbjct 964321 CTGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATAT 964380
Query 146399 TGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGC 146456
| | || |||| || | || || | || ||| || | || | ||||| || ||
Sbjct 964381 TCA-GCAGCTGGGCTTCAGAACTTTCAAATGG-ATAACGCATGAGGATGAAGGCATCTGC 964438
Query 146457 GAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGC 146516
|||||||| | |||| |||| || | ||| |||||| ||| | || | |
Sbjct 964439 AAGACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGG 964498
Query 146517 AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAA 146576
| || |||| ||| |||| |||||||| |||||||| | || | | ||| ||
Sbjct 964499 AACTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGT--- 964555
Query 146577 ACGATTCAG-CAGGACAT----AGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTG 146631
|| | || || | | | ||||| || ||| | || || || |||||
Sbjct 964556 --GACTGAGGCAAGCTTTTTGAAATCAAAGGTGC--GTTCTGGAGTA-ACATACATGTTG 964610
Query 146632 ACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATC 146691
| || || |||||||||||||| ||||| || || ||| ||||| |||||||
Sbjct 964611 AGAGCAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATC 964670
Query 146692 TCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTG 146751
|| | ||| | ||| ||||| |||||| |||||||||| | |||||||| | ||||
Sbjct 964671 TCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTA 964730
Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789
|||| || ||||| | |||||| ||| || |||||
Sbjct 964731 CAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTC 964768
>seq4874
Length=535125
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| || | ||| | ||||| ||||| || || ||||| ||| | ||||| |
Sbjct 502017 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 501958
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || |||||||| ||||| |||||| | |||||||||||| || |||||||||||
Sbjct 501957 TCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTA 501898
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
|| ||| || || | | || | ||||| | ||| || || | ||| |
Sbjct 501897 TCTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATG 501838
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||||| || || ||||| ||||| ||||||||
Sbjct 501837 GTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 501803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475345905614400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |