Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18889 132 5e-26 seq4874 100 3e-16 >seq18889 Length=1054283 Score = 132 bits (146), Expect = 5e-26 Identities = 494/758 (65%), Gaps = 30/758 (4%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGC-GCCTCAG 146102 ||| |||| | |||| |||| || | ||||||||| || | || || | || | | Sbjct 964029 AGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTG 964088 Query 146103 ATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGT 146162 || | |||||||||| | | |||| ||||| ||||| || ||||| ||||| || | Sbjct 964089 -TAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGA 964147 Query 146163 AGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTC 146222 || || ||||| |||| || || ||| ||||| |||||| | |||||| || Sbjct 964148 GGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTC 964207 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || ||| | ||| | | || ||||| | | | ||||||| Sbjct 964208 CTTAAGCAGCTT---CCAGTCCCAGA---GCTCAGTGGGCACCTTTTCCCACATGTCGTA 964261 Query 146280 ATGCATAGTGCCGCGGAACAGGGGGCTATTCTCG-TACGATTCATAAGGACCGTCGATCT 146338 |||| | |||| | || ||| | || | || | |||||||| ||||| | | Sbjct 964262 TTGCAGAATGCCCCTACTCACTGGGG-AGCCTGGGTATGTCTCATAAGGCCCGTCCTTTT 964320 Query 146339 TGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGT 146398 |||| |||||||| || ||||| || | | |||| ||||| || |||| | | Sbjct 964321 CTGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATAT 964380 Query 146399 TGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGC 146456 | | || |||| || | || || | || ||| || | || | ||||| || || Sbjct 964381 TCA-GCAGCTGGGCTTCAGAACTTTCAAATGG-ATAACGCATGAGGATGAAGGCATCTGC 964438 Query 146457 GAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGC 146516 |||||||| | |||| |||| || | ||| |||||| ||| | || | | Sbjct 964439 AAGACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGG 964498 Query 146517 AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAA 146576 | || |||| ||| |||| |||||||| |||||||| | || | | ||| || Sbjct 964499 AACTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTTACAATTACTTTAGT--- 964555 Query 146577 ACGATTCAG-CAGGACAT----AGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTG 146631 || | || || | | | ||||| || ||| | || || || ||||| Sbjct 964556 --GACTGAGGCAAGCTTTTTGAAATCAAAGGTGC--GTTCTGGAGTA-ACATACATGTTG 964610 Query 146632 ACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATC 146691 | || || |||||||||||||| ||||| || || ||| ||||| ||||||| Sbjct 964611 AGAGCAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATC 964670 Query 146692 TCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTG 146751 || | ||| | ||| ||||| |||||| |||||||||| | |||||||| | |||| Sbjct 964671 TCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTA 964730 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 |||| || ||||| | |||||| ||| || ||||| Sbjct 964731 CAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTC 964768 >seq4874 Length=535125 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | ||||| ||||| || || ||||| ||| | ||||| | Sbjct 502017 CGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 501958 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| ||||| |||||| | |||||||||||| || ||||||||||| Sbjct 501957 TCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTA 501898 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || || | | || | ||||| | ||| || || | ||| | Sbjct 501897 TCTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACCTCAAGGGTAATG 501838 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || ||||| ||||| |||||||| Sbjct 501837 GTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 501803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475345905614400