Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq21827 695 0.0 seq25415 533 2e-146 >seq21827 Length=6214 Score = 695 bits (770), Expect = 0.0 Identities = 748/987 (76%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 7535 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGA 7594 ||||| || || ||||||||||| ||||| ||||| || ||||| |||||||| || | Sbjct 6016 GCAGCTAGATCTAGAGGGAAGTTATGAGCGTTACGTTCATGCATAACTTCCATACCCAAG 5957 Query 7595 CCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATG 7654 ||||||||||| | || |||||||| || | ||||||||||||| ||||| | Sbjct 5956 TTAGCACGGTTGATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA 5897 Query 7655 GACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTG 7714 || |||||||| |||||||| || | ||| || ||||| ||||||| ||| | ||||||| Sbjct 5896 GATTGGTTGAAATTGAAACCATTTAAGTTAAAAGCCATAGTGCTAATACCTAAAGCAGTG 5837 Query 7715 AACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTG 7774 ||||| || || || || ||||| || || ||||||||||| | ||||| ||||||||| Sbjct 5836 AACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTG 5777 Query 7775 AACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAG 7834 || ||| ||||||||||||| || ||||| || || |||||||| ||||| |||||| Sbjct 5776 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAG 5717 Query 7835 GTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCA 7894 || ||||| ||||||||||| | ||||| | || || ||| || |||||||| Sbjct 5716 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 5657 Query 7895 CGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAG 7954 | | || | ||| ||||| | ||||||||||| |||||||| || || || || || Sbjct 5656 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 5597 Query 7955 ACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAG 8014 |||||||| ||||| | |||||| || |||||||| |||||||||||||| |||||||| Sbjct 5596 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAT 5537 Query 8015 ACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCT 8074 |||| |||| ||||||| ||||||||||| || ||||||||| ||||||| || ||| Sbjct 5536 ACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCT 5477 Query 8075 TGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCT 8134 ||||| | ||||||| | ||| ||||||| || || ||||| ||||| || ||||| Sbjct 5476 TGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 5417 Query 8135 ACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTAT 8194 ||| ||||| || |||||||| |||||| || ||||||||||||||||||||| || Sbjct 5416 ACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAA 5357 Query 8195 GCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGC 8254 | | ||| | | ||||| | | || || | |||||||||| ||||| | | Sbjct 5356 CAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAAC 5297 Query 8255 CACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAA 8314 || ||||||| ||||| |||||||| || || || || || | ||| || || |||| Sbjct 5296 CATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATCGCTGCAGAA 5237 Query 8315 GAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGT 8374 | ||||| || |||||||| || || ||||| ||||| | || || |||| || ||| Sbjct 5236 GTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 5177 Query 8375 TCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAAT 8433 ||||| || || ||||| || || ||||| ||||| | |||||||| || || ||| | Sbjct 5176 TCACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA- 5118 Query 8434 AGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATT 8493 || || | | | ||||| ||||||| ||||| ||||| || | || ||||| || Sbjct 5117 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 5058 Query 8494 GTTGGTGGAGGTTACCCAGTTACAGAA 8520 | ||| ||||| |||||||||||| Sbjct 5057 TTCAGTGCTGGTTATCCAGTTACAGAA 5031 >seq25415 Length=1491 Score = 533 bits (590), Expect = 2e-146 Identities = 728/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 1378 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 1319 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || ||||| ||||| ||| Sbjct 1318 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTC 1259 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | || Sbjct 1258 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGA 1199 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 1198 TTCAGGGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 1139 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 1138 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 1079 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| ||| | Sbjct 1078 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCCCGG 1019 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| ||||| |||||||| |||||| Sbjct 1018 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATA 959 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || || | || || || |||||||||||||| ||||| | Sbjct 958 GCGCATAGCAGAGCAGCGCCCAATACCCCAGCAACTCCCATCATATGAAATGGGTTCAAT 899 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| || || |||||||| Sbjct 898 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 839 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 838 CTTGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAGGAATACAGAAACAAAA 779 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 || ||||| ||||| || || ||||||||||| || || || | | || ||| || || Sbjct 778 ACCGCAATTGGACCGGAGAATGCGATTGCATTATAAGGTCGTA-ATTGAACAGATCGAGC 720 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | |||||||||||| || | || || ||||| || || ||||| Sbjct 719 AAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCGCCGTGAAGAGCAACAAA 660 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| || ||||| Sbjct 659 AGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGGCCCCA 600 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| | | | || ||| | | | | ||||||||| || || || || || | ||| Sbjct 599 TAGTAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACTGCGGCGGTTAAGAA 540 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 || || || || | ||| ||| || | || || || ||||| || || || || Sbjct 539 GTTGCAGCCTTCCAAATAGGAACTTGCTAATCCATGGGTATACCATGAAGTTACAAAGGT 480 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || || | |||||| || | || | || ||| ||| || || | ||||| || Sbjct 479 TGTACCTGTAAACCAACCCCCTACGGCGAAATAGGCACAAGGAAAGAGCAATAGACCGGA 420 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 419 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621922142846400