Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4874 140 8e-28 seq10742 132 1e-25 seq18279 87.8 4e-12 >seq4874 Length=535125 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || || || || |||| ||||||||| | | || | ||||| Sbjct 502243 CAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 502184 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| ||||||||||| || | |||||| || || ||| ||||| || Sbjct 502183 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502124 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| ||| | |||||| | | || || |||| ||||| || Sbjct 502123 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 502064 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 502063 CTTCCCAGTGAGGGTTTTCACAAAGATCTG 502034 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || || || || |||| ||||||||| | | || | ||||| Sbjct 502471 CAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 502412 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| ||||||||||| || | |||||| || || ||| ||||| || Sbjct 502411 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502352 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| ||| | |||||| | | || || |||| ||||| || Sbjct 502351 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 502292 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 502291 CTTCCCAGTGAGGGTTTTCACAAAGATCTG 502262 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || || || |||| ||||||||||| | || | ||||| Sbjct 502927 CAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 502868 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| ||||| ||||| || | |||||| || || ||| ||||| || Sbjct 502867 TTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502808 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| ||| | |||||| | | || || |||| ||||| || Sbjct 502807 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 502748 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 502747 CTTCCCAGTGAGGGTTTTCACAAAGATCTG 502718 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || || || || |||| ||||||||| | | || | ||||| Sbjct 502699 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 502640 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| ||||||||||| || | |||||| || || ||| ||||| || Sbjct 502639 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 502580 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| ||| | ||||| | | || || |||| || || || Sbjct 502579 CTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACCTCCAGAGTAATGGT 502520 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 502519 CTTCCCAGTGAGGGTTTTCACAAAGATCTG 502490 >seq10742 Length=3397572 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||||| | ||| | |||||| Sbjct 2148692 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 2148751 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || || | |||||| || ||| ||| || ||| || Sbjct 2148752 TCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGAATACCCTCTTTGTCT 2148811 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || ||||| || | |||||| ||| ||| || ||||| ||||| || Sbjct 2148812 TGAAT-TTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAACCTCCAAAGTGATGGT 2148870 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || ||||| || || Sbjct 2148871 CTTCCCAGTCAGGGTCTTAACAAAGATCTG 2148900 Score = 131 bits (144), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||||| | ||| | |||||| Sbjct 2148920 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 2148979 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || || || | ||||||||| ||| || ||||| ||| Sbjct 2148980 TCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCC 2149039 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| ||| | ||||| | | || || ||||| ||||| || Sbjct 2149040 TGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTT 2149099 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || || || ||||| || || |||||| Sbjct 2149100 TTACCAGTCAGGGTCTTAACAAAGATCTG---CATTTT 2149134 >seq18279 Length=91511 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||| | || ||| | |||||| |||||||| || ||||||||| Sbjct 1809 CCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAG 1868 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| || ||| |||||| Sbjct 1869 ATCAGACGCTGCTGATCAGGAGGGATTCCT 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178527965446020