Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10742 140 4e-28 seq4874 131 2e-25 >seq10742 Length=3397572 Score = 140 bits (154), Expect = 4e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||||| || | || |||||| ||||| |||||||| || Sbjct 2148905 CCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2148964 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || |||||||| || || || |||| | ||||||||| | || Sbjct 2148965 AGAGTGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 2149024 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| |||||| ||| | | | | ||||| |||| || || Sbjct 2149025 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 2149084 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 |||| ||||||||||| || ||||| || ||||||||||| |||||||||| Sbjct 2149085 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTTGC 2149136 Score = 132 bits (146), Expect = 5e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || || |||||||| || |||| ||||| || | || |||||||| || |||||| Sbjct 2148443 TAGTTTCCTCCTCTCAATCGCAGCACCAAGTGGAGGGTGGATTCCTTTTGAATGTTGTAG 2148502 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || || ||||| | || || |||||||| || ||||| |||| | ||| ||||| Sbjct 2148503 TCTGAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGTTGGTCA 2148562 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | | ||| |||||| |||||| ||||| | | | ||||| || | | Sbjct 2148563 GGAGGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTAGGT 2148622 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| || || ||||| || ||||||||||| ||||| Sbjct 2148623 TCCACCTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148675 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||||| || | || |||||| ||||| |||||||| || Sbjct 2148677 CCTCCTCTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2148736 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || |||||||| || ||||| |||| | |||||| || | || Sbjct 2148737 AGAGTGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGA 2148796 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| || || || | || | | ||||| || | ||| || Sbjct 2148797 ATACCCTCTTTGTCTTGAATTTTGGCTTTCACATTCTCAATGGTGTCACTTGGTTCAACC 2148856 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || ||||| || ||||||||||| ||||| Sbjct 2148857 TCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903 >seq4874 Length=535125 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | ||| || || ||||| ||||||||||| Sbjct 502257 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 502198 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||||||||| |||| | |||||| || | || Sbjct 502197 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502138 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | | | | ||||| || | ||||| Sbjct 502137 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 502078 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || || ||||| |||||||| ||||| Sbjct 502077 TCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502031 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| || ||||| | ||| || || ||||| ||||||||||| Sbjct 502485 CCACCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 502426 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||||||||| |||| | |||||| || | || Sbjct 502425 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502366 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | | | | ||||| || | ||||| Sbjct 502365 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCCACC 502306 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || || ||||| |||||||| ||||| Sbjct 502305 TCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502259 Score = 123 bits (136), Expect = 3e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 46356 TATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATAT 46415 || |||| | ||| || || | ||||| ||| ||||| | || || || ||||| | Sbjct 502952 TAAATTACTGGCCACCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGT 502893 Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| | || || |||||||||||||| || |||| | ||||| Sbjct 502892 TGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCT 502833 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 | || | || | || ||||||||| |||||| ||| | | | | ||||| | Sbjct 502832 GATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCAC 502773 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | | ||||| |||| |||||||| || || || || ||||| |||||||| ||||| Sbjct 502772 TGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502715 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | ||| || || ||||| ||||||||||| Sbjct 502029 CCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 501970 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| ||||| || || |||| | |||||| |||| || Sbjct 501969 AGGGTGCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 501910 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||| || |||||| || | || | | |||||||| | ||||| Sbjct 501909 ATGCCCTCCTTATCTTGGATCTTGGCTTTAACATTCTCAATAGTGTCGCTGGGCTCCACC 501850 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | || ||||||||||| || || ||||| |||||||| ||||| ||| Sbjct 501849 TCAAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 501799 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | || || || ||||| ||||||||||| Sbjct 502713 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 502654 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||||||||| |||| | |||||| || | || Sbjct 502653 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGA 502594 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | | | | ||||| || | ||||| Sbjct 502593 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCCACC 502534 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| || || || || ||||| |||||||| ||||| Sbjct 502533 TCCAGAGTAATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 502487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565054273591200