Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3171 154 6e-32
seq10742 109 2e-18
seq24987 91.5 6e-13
>seq3171
Length=1257762
Score = 154 bits (170), Expect = 6e-32
Identities = 283/414 (68%), Gaps = 3/414 (1%)
Strand=Plus/Minus
Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252
|| |||||| | | |||| | || |||||||| || || | ||| ||| ||||||
Sbjct 1255359 GGCAAGCCCAAAGTAGAAGTGGAGTACAAAGGTGAGACAAAGGCGTTTTATCCAGAAGAA 1255300
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312
|| ||||| |||||| | ||| ||||| |||| ||||| ||| | || |
Sbjct 1255299 ATCTCATCAATGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGTATTTGGGGCAGAGA 1255240
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|| | ||||||| || || || || ||||||||||| || | || || ||||| ||
Sbjct 1255239 GTGTCCAATGCAGTCATCACAGTCCCTGCTTATTTCAACGACTCCCAGCGCCAAGCCACA 1255180
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| |||| |||| | ||||| || |||| || |||||||| || |||
Sbjct 1255179 AAAGATGCCGGAGTTATTTCTGGCCTGAATGTGCTGAGAATCATCAATGAACCAACCGCA 1255120
Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492
|| ||| | |||||||| ||| || | ||| || || |||| || | |
Sbjct 1255119 GCCGCTATTGCATATGGTTTAGACAAGGGGA---AAAGAGGGGAGCGAAATGTTCTCATC 1255063
Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552
|||||| | ||||| || ||| ||| || | || ||||||||||||| | |||
Sbjct 1255062 TTTGATCTGGGTGGTGGCACTTTTGACGTATCCATCCTGACAATTGAAGATGGTATTTTT 1255003
Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606
|| ||||| || || ||||| || || | || || ||||| |||| |||
Sbjct 1255002 GAGGTAAAAGCCACAGCCGGTGACACACACTTGGGCGGAGAAGACTTTGACAAT 1254949
>seq10742
Length=3397572
Score = 109 bits (120), Expect = 2e-18
Identities = 159/225 (71%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || ||||| || |||||||| || || || ||| | || |||||| || |
Sbjct 2148903 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAGT 2148844
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | | ||| ||||||||||| || || || ||||||||||||||
Sbjct 2148843 GACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAAGAGGGTATTCCTCCTGATCAG 2148784
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | |||||| | || || || || |||||||| | ||| | | || || ||
Sbjct 2148783 CAGAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 2148724
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274
|| | ||||| | || || ||| | || || | |||||||||
Sbjct 2148723 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGA 2148679
Score = 87.8 bits (96), Expect = 7e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || ||||| || |||||||||||||| || ||| | || ||||| |
Sbjct 2149132 AATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCGAG 2149073
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||| | |||||| | || || || || ||||||||||| || |||||||| ||
Sbjct 2149072 TGACACAATTGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGACCA 2149013
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| | | ||||| | || || || || |||||||| | ||| | | || || ||
Sbjct 2149012 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAA 2148953
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274
|| | ||||| | || || ||| | || || | |||||||||
Sbjct 2148952 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGA 2148907
Score = 86.0 bits (94), Expect = 2e-11
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || ||||| || |||||||| || || || ||| | || || ||| | |
Sbjct 2148675 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAGT 2148616
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||||| | || ||| || || || || || || || |||||||| |||
Sbjct 2148615 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAA 2148556
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | |||||| | || || || ||||||||||| | || | | || || ||
Sbjct 2148555 CAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAAC 2148496
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274
||| | ||||| | || || ||||| || | || ||||||||
Sbjct 2148495 ATTCAAAAGGAATCCACCCTCCACTTGGTGCTGCGATTGAGAGGA 2148451
>seq24987
Length=1398849
Score = 91.5 bits (100), Expect = 6e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
||| | | |||| || | ||||| || || || ||||||||| | || || || || ||
Sbjct 197123 AGTGAATAATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGACAGGCTAC 197182
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
|||||||||||| ||| |||| | ||||||||| | ||||| || || || |||||
Sbjct 197183 AAAAGATGCAGGAGTCATTTGTGGTCTTAATGTTCTTTGCATTATCAACGAGCCAACAGC 197242
Query 451432 AGCTGCTCTAGCATATGG 451449
|||||| | || |||||
Sbjct 197243 TGCTGCTATTGCTTATGG 197260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975058719974480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |