Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3171 154 6e-32 seq10742 109 2e-18 seq24987 91.5 6e-13 >seq3171 Length=1257762 Score = 154 bits (170), Expect = 6e-32 Identities = 283/414 (68%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | |||| | || |||||||| || || | ||| ||| |||||| Sbjct 1255359 GGCAAGCCCAAAGTAGAAGTGGAGTACAAAGGTGAGACAAAGGCGTTTTATCCAGAAGAA 1255300 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || ||||| |||||| | ||| ||||| |||| ||||| ||| | || | Sbjct 1255299 ATCTCATCAATGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGTATTTGGGGCAGAGA 1255240 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||||| || || || || ||||||||||| || | || || ||||| || Sbjct 1255239 GTGTCCAATGCAGTCATCACAGTCCCTGCTTATTTCAACGACTCCCAGCGCCAAGCCACA 1255180 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||| |||| | ||||| || |||| || |||||||| || ||| Sbjct 1255179 AAAGATGCCGGAGTTATTTCTGGCCTGAATGTGCTGAGAATCATCAATGAACCAACCGCA 1255120 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || ||| | |||||||| ||| || | ||| || || |||| || | | Sbjct 1255119 GCCGCTATTGCATATGGTTTAGACAAGGGGA---AAAGAGGGGAGCGAAATGTTCTCATC 1255063 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||| | ||||| || ||| ||| || | || ||||||||||||| | ||| Sbjct 1255062 TTTGATCTGGGTGGTGGCACTTTTGACGTATCCATCCTGACAATTGAAGATGGTATTTTT 1255003 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || ||||| || || ||||| || || | || || ||||| |||| ||| Sbjct 1255002 GAGGTAAAAGCCACAGCCGGTGACACACACTTGGGCGGAGAAGACTTTGACAAT 1254949 >seq10742 Length=3397572 Score = 109 bits (120), Expect = 2e-18 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || |||||||| || || || ||| | || |||||| || | Sbjct 2148903 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTTGAACCAAGT 2148844 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||||||||| || || || |||||||||||||| Sbjct 2148843 GACACCATTGAGAATGTGAAAGCCAAAATTCAAGACAAAGAGGGTATTCCTCCTGATCAG 2148784 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | |||||| | || || || || |||||||| | ||| | | || || || Sbjct 2148783 CAGAGGCTGATTTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAAC 2148724 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || || ||| | || || | ||||||||| Sbjct 2148723 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGA 2148679 Score = 87.8 bits (96), Expect = 7e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || ||||| || |||||||||||||| || ||| | || ||||| | Sbjct 2149132 AATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCGAG 2149073 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | || || || || ||||||||||| || |||||||| || Sbjct 2149072 TGACACAATTGAAAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCTGACCA 2149013 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | ||||| | || || || || |||||||| | ||| | | || || || Sbjct 2149012 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGCACTCTCTCTGACTACAA 2148953 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || || ||| | || || | ||||||||| Sbjct 2148952 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTACGTCTGAGAGGA 2148907 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || |||||||| || || || ||| | || || ||| | | Sbjct 2148675 ATGCAGATCTTTGTTAAGACCCTGACTGGGAAGACCATCACTTTGGAGGTGGAACCTAGT 2148616 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | || ||| || || || || || || || |||||||| ||| Sbjct 2148615 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAA 2148556 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | |||||| | || || || ||||||||||| | || | | || || || Sbjct 2148555 CAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCAGACTACAAC 2148496 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| | || || ||||| || | || |||||||| Sbjct 2148495 ATTCAAAAGGAATCCACCCTCCACTTGGTGCTGCGATTGAGAGGA 2148451 >seq24987 Length=1398849 Score = 91.5 bits (100), Expect = 6e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| | | |||| || | ||||| || || || ||||||||| | || || || || || Sbjct 197123 AGTGAATAATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGACAGGCTAC 197182 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||||||| ||| |||| | ||||||||| | ||||| || || || ||||| Sbjct 197183 AAAAGATGCAGGAGTCATTTGTGGTCTTAATGTTCTTTGCATTATCAACGAGCCAACAGC 197242 Query 451432 AGCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 197243 TGCTGCTATTGCTTATGG 197260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975058719974480