Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3171 342 4e-88 seq1110 104 2e-16 seq24987 102 6e-16 seq24691 87.8 1e-11 >seq3171 Length=1257762 Score = 342 bits (378), Expect = 4e-88 Identities = 980/1496 (66%), Gaps = 22/1496 (1%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| || || ||||| ||||| | || ||||| |||||||| || ||||| Sbjct 1254185 GCAGAGACATTGAGGATGCCATTCGCATCAATGTCGAATGTTACTTCAATCTGCGGGACT 1254244 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| | || ||||||||||| || | |||| | || || || || |||||| Sbjct 1254245 CCTCTTGGGGCTGGTGGGATCCCCGTCAGGTCAAATTTGCCGAGGAGGTTGTTGTCTTTA 1254304 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | |||||| || || | ||||| || | | || ||||| || || Sbjct 1254305 GTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCTGGCTGGTTATCGGAGTAG 1254364 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || | | || || ||| || || || ||||| | | || | |||| Sbjct 1254365 GTGGAGAAGATTTGGGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATCAACGCGGTC 1254424 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || | || ||||||||||| | || | ||| || |||| ||||| | | | | Sbjct 1254425 ATTACTCCTCCTGCTGTTTCAATGCCCAAAGACAGTGGAGCAACATCTAGCAAAAGGAGG 1254484 Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | || | || || || | || | || ||||| || || | ||||| ||||| Sbjct 1254485 TCCTGGACATTCTCCGAGGTGTCCCCCATCAGGATAGCAGCCTGTACCGCAGCTCCATAG 1254544 Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 517678 || || |||||||| || || | ||| || | | | ||||| || || | Sbjct 1254545 GCCACTGCTTCATCTGGGTTGATGCTTTTGTTCAACTCCCTTCCATTAAAGAAGTCCTGC 1254604 Query 517679 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 517738 || |||| | | |||||||| | | ||||| ||||| | || || || | | | Sbjct 1254605 AGTAGTTTTTGGATTTTAGGAATTCTCGTGGATCCACCAACCAGGACGATGTCGTTGATC 1254664 Query 517739 TGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTA 517798 | || || ||||| || | || |||| |||| ||||| || || || | || Sbjct 1254665 TTGGACTTGTCCAGCTTGGCGTCTTGTAAAGCTTTCTCAACTGGGTCTAGTGTTCCCCTG 1254724 Query 517799 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAA 517856 || | |||||| |||||||| ||| |||| | ||| || ||| | || || |||| Sbjct 1254725 AAGAGGTCTGAGTTGAGTTCTTCAAATCTAGCACGAGT--GATTGAGGTGTAAAAGTCAA 1254782 Query 517857 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 517916 ||||||| | | ||| |||| ||| || | | ||| || || ||||| | | | Sbjct 1254783 TTCCTTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGGGTCCTCT 1254842 Query 517917 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTG 517976 | || ||||||||||| || | || || | | ||| | || ||| | ||| | Sbjct 1254843 TGGCGCGTTCACATGCCGTTCGCAGCCTCCTCACTGCTCT--CTTATTTTGGCTAATGTC 1254900 Query 517977 TTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 518034 ||| | | |||||||| || || |||||| | | || | |||||| ||||| || Sbjct 1254901 TTTCTTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATACGATTGTCAAAGTC 1254960 Query 518035 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 518094 ||| || ||||| | || | || | || ||| |||| | |||| |||||||||| Sbjct 1254961 TTCTCCGCCCAAGTGTGTGTCACCGGCTGTGGCTTTTACCTCAAAAATACCATCTTCAAT 1255020 Query 518095 AGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154 | || | | ||| ||| || |||||||||| |||||| || || ||||| || Sbjct 1255021 TGTCAGGATGGATACGTCAAAAGTGCCACCACCCAGATCAAAGATGAGAACATT----TC 1255076 Query 518155 TTTGTCTTGGTTT----TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 | | | ||| || || | |||||| |||| ||| || || ||||||||||| | Sbjct 1255077 GCTCCCCTCTTTTCCCCTTGTCTAAACCATATGCAATAGCGGCTGCGGTTGGTTCATTGA 1255136 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 | ||||||| ||||| || |||| ||| ||| |||||||| |||||||| | || | Sbjct 1255137 TGATTCTCAGCACATTCAGGCCAGAAATAACTCCGGCATCTTTTGTGGCTTGGCGCTGGG 1255196 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAA 518329 | ||||| ||||| ||||| || || || || |||| | ||| ||| |||| ||| Sbjct 1255197 AGTCGTTGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTCTGCCCCAA-ATAC 1255255 Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 || ||| ||| ||||| ||| |||| ||||||||| |||| |||||| || | Sbjct 1255256 GCCTCTGCAATTTCCTTCATCTTAACCAAAACCATTGATGAGATTTCTTCTGGATAAAAC 1255315 Query 518390 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 518449 ||| | ||| || || ||||| | | || || || || | || ||| Sbjct 1255316 GCCTTTGTCTCACCTTTGTACTCCACTTCTACTTTGGGCTTGCCACTGTCACTGATGACT 1255375 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 || || ||||| ||||| || | ||| ||| | ||||||| ||| | ||| || || Sbjct 1255376 TTGAAAGGCCAAAGCTTCATGTCAGCTTGCACAATATGGTCATCAAATTTTCTCCCTATG 1255435 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 | || || |||||||| || || || | || || || || | || | ||||||||| Sbjct 1255436 AGTCTCTTGGCATCAAAGATGGTGTTAATCGGGTTCATGGCCACCTGGTTTTTGGCTGCG 1255495 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || ||||| | | ||||| || || || | |||||| || || |||||||| || Sbjct 1255496 TCACCAATTAACCGCTCTGTGTCAGTGAAGGCAACATAACTGGGGGTGGTGCGATTGCCC 1255555 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 518689 || || || || || || || ||||| |||| || | ||||| || || | || Sbjct 1255556 TGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAGGAGTAGGTG 1255615 Query 518690 GTTCCTAAATCAATACCAATAGCAA---TTTTATCTGACATTATTATTATGACTCT 518742 || || | ||||| ||||| | || |||| | ||||| || || | ||||| Sbjct 1255616 GTGCCCAGGTCAATGCCAATGGAAAGACCTTTAGCAGACATGTTTGTT-TTACTCT 1255670 >seq1110 Length=1300725 Score = 104 bits (114), Expect = 2e-16 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | ||| |||||||||||||||||||| | ||||| ||||||||||| Sbjct 27587 TTTGTCCACGGCTGACACGTTAAGAATACCATTGGCATCAATGTCAAAGGTGACTTCAAT 27528 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || ||||| ||||| ||||||||||||| || | | ||| ||||||| | || Sbjct 27527 CTGGGGGACACCTCTTGGAGCAGGTGGGATACCAGTGAGCTCAAACTTTCCCAGGATGTT 27468 Query 517369 ATTATCTTTAGT 517380 || |||||||| Sbjct 27467 GTTGTCTTTAGT 27456 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| || || || ||||||||||| || || | || ||| Sbjct 26456 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATGATACGCAGCACA 26397 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| ||| |||||||| || || || | || || || || || || Sbjct 26396 TTAAGCCCAGCAATAGCTCCAGCATCTTTGGTTGCCTGGCGCTGGGAGTCATTGAAGTAG 26337 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||||| | ||| |||| Sbjct 26336 GCAGGGACAGTTACAACTGCAT 26315 >seq24987 Length=1398849 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||| ||||| || || ||||| | | ||||||||||||| | Sbjct 197260 CCATAAGCAATAGCAGCAGCTGTTGGCTCGTTGATAATGCAAAGAACATTAAGACCACAA 197201 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||||||||||| || || |||| || ||||| || || || || || ||||| Sbjct 197200 ATGACTCCTGCATCTTTTGTAGCCTGTCGCTGAGAATCATTGAAGTAGGCTGGCACAGTC 197141 Query 518297 ATAACGGCATCAGTTACTT 518315 | ||| |||| | | |||| Sbjct 197140 ACAACAGCATTATTCACTT 197122 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||| || ||| |||| || |||||||| || || || |||| | ||| ||| Sbjct 198435 GCAGACACATTCAGTATATCATTAGCGTCCAAATCGAACGTTACATCAACCTTAGGAACC 198376 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || || || ||||| || ||||| |||| | |||| | | ||||||||||| Sbjct 198375 CCCCTTGGACATGGGGGGATTCCAGTCAAATCAAATTTCCCCAAACTGTTATTATCTTTG 198316 Query 517379 GTGAATTTTCGTTCACC 517395 || ||| || |||||| Sbjct 198315 GTCAATGATCTTTCACC 198299 >seq24691 Length=1849 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| || || ||||| |||| || || || || || || || || ||||||| ||||| Sbjct 1375 TTTGTCCAGGCCATAGGCAATGGCGGCGGCTGTGGGCTCGTTGATGATTCTCAGGACATT 1434 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 || ||||| || ||||| ||||||||||||||||| || || ||||| || || || Sbjct 1435 GAGGCCAGCGATCACACCTGCGTCTTTAGTGGCTTGTCTCTGAGAGTCGTTGAAGTAGGC 1494 Query 518287 AGGAACAGTAATAACGGC 518304 || || || || || || Sbjct 1495 CGGGACTGTGATTACTGC 1512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779529216958360