Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq18889 233 2e-56 seq22773 109 6e-19 seq19222 86.0 7e-12 >seq18889 Length=1054283 Score = 233 bits (258), Expect = 2e-56 Identities = 935/1442 (65%), Gaps = 50/1442 (3%) Strand=Plus/Plus Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946 ||||| ||| |||||| ||||||||| | ||| ||| | |||||||| | Sbjct 964041 AGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTG 964100 Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||||| ||| | | | ||||| || || | ||||| || ||||||||||| ||||| Sbjct 964101 GTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATA 964160 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 || |||| ||| || ||||| | | ||| | || || ||||| || | | | Sbjct 964161 GGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTC 964220 Query 106067 CAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATTGAAGCA--CCCCTT 106121 ||||| || |||| || |||||| ||||||| || |||| || | ||||| Sbjct 964221 CAGTCCCAG---AGCTCAGTGGGCACCTTTTCCCACATGTCGTATTGCAGAATGCCCCTA 964277 Query 106122 GGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 || ||||| || |||||||||| | || | ||| ||||| || |||| Sbjct 964278 CTCACTGGGGAG--CCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGC 964335 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 | |||||||||| || | || |||||||||||||| | ||||| | || ||||| Sbjct 964336 TTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATATTCAGCAGCTGGGCTT 964395 Query 106242 CATCTGAA---TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACAC 106298 || ||| ||||||| || || | || || |||| || ||||| || |||| Sbjct 964396 CA---GAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACAC 964452 Query 106299 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAA 106355 | | ||||| || ||||| ||| | || || || | | | ||| || || || Sbjct 964453 CGATCCCAATTGGCCTGTGGCGCTTGTTTGAATT---CTCTGCTTCAGGAACTGGGTAGT 964509 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAA 106412 | || ||||||||| || |||||| | ||||| |||| |||| | || Sbjct 964510 AGTTAATGTCAATGATCTTATTGAGATTTCTT---ACAATTACTTTAGTGACTGAGGCAA 964566 Query 106413 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATG 106472 | |||| ||||||| ||||| ||| | | |||||| | || || ||||| | Sbjct 964567 GCTTTTTGAAATCAAAGGTGCGT---TCTGGAGTAACATACATGTTGAGAGCAATTGAGG 964623 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 |||| || || || || ||||| || ||| ||||| | ||| || || ||||||| Sbjct 964624 CCAAGTTACAGACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGT 964683 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 | | || || || |||||||||| ||||||||||| |||| || ||||| |||| Sbjct 964684 TACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGT 964743 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CG 106651 | | |||||| || || ||||| || ||||| |||| | || || | |||||| | | Sbjct 964744 ACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGATGGCATACCACACCTGCT 964803 Query 106652 GCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 106711 | | || | || || || | | |||||| || || |||||| || ||| Sbjct 964804 GAGCCTTGACCACCCGC-TTCACTCTACCCTCCTGTTCATATCGTGTGTACAGCTTCTCA 964862 Query 106712 AACTCCT-CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGACC 106769 ||||||| | |||| | | || | ||| | || | || ||||| | | ||||| Sbjct 964863 AACTCCTCCCCCCAACAC-TCATCCA-ACCCAGGGCACTCACTGGGACACATCAAAGACC 964920 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829 | | | || || | ||||||||| ||||| || ||||| |||| | |||| Sbjct 964921 AGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGA 964980 Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATG 106888 | |||| || ||| || | ||| ||| || | | |||||| || || | Sbjct 964981 GGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTT-CTTCTTCAGCTCAAGAAAGTCAAAC 965039 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCT 106945 | ||| |||||||||||| | || | || | | ||| ||| | ||| || Sbjct 965040 ACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCT 965099 Query 106946 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 107005 || | |||||||| || ||| ||| | || | ||||| || | || ||||| ||| Sbjct 965100 TGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACCATTTGAG 965159 Query 107006 TGACCATTTGTCCCCCGAATACGAGATTTATTG--GCTCTCACATCATGGATGTGC-ATC 107062 | ||||||||| || ||| | | || || | ||| | | || | ||| | Sbjct 965160 TTACCATTTGTTCCAGCAAT--GTAACTTCCTGTTGATCTAATA-CAGCTAACTGCTACA 965216 Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 ||||| || || || | || ||||| | ||||| | | || || |||| || || Sbjct 965217 CCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAATGCCA 965276 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | || ||| ||||| |||| | |||||||| ||||| | ||| ||||| || Sbjct 965277 TCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTTAGTG 965336 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTA 107241 || || ||||| || || || | || ||| ||||| || | | |||| | || ||| Sbjct 965337 CCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAAC-CACTTCTCAGACAGCAGGTTGTA 965395 Query 107242 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 ||||| | | | | ||| || || |||||| |||| || || | ||| | ||| Sbjct 965396 GGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAGCAT 965455 Query 107302 GT 107303 || Sbjct 965456 GT 965457 >seq22773 Length=730387 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||| |||| ||| || || |||| |||| ||| || || || Sbjct 300283 CTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCC 300342 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 | ||||| ||||| ||||| | ||||| ||||| |||||||||||||| || || || Sbjct 300343 TAGATTCTGCTGGTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACC 300402 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||||| |||||||||| | ||| || | ||||| Sbjct 300403 CGTCTCTGTCTGTGACTCAATAATGGCATACCACA 300437 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 106130 GGAGAACCCTCAAATGTCTCATAGGAACC---TTGGGCTTCAGCCAATTCACAGCTCGCC 106186 ||||| || || |||| ||||| | || |||||| ||| | ||||||||| ||| Sbjct 299780 GGAGAGCCAGCATATGTTTCATAAGGTCCATCTTGGGC---AGCTAGTTCACAGCTGGCC 299836 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 |||| | || | ||| ||||| ||||| || | || | | || ||| || || Sbjct 299837 TCCAAAGCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATACTGGGCCTCTTCA 299896 Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 ||||||| || || | ||| || | ||||| ||||| |||||||| | ||| Sbjct 299897 CTTTCAAATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCGATCCCA 299956 Query 106307 ATAGGTCTGTGTCGCATATTAGAC 106330 ||||||||||| ||||| |||||| Sbjct 299957 ATAGGTCTGTGGCGCATGTTAGAC 299980 >seq19222 Length=928746 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/123 (78%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTG-AGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||||| | ||||||||||| | | ||| | ||||| ||||| ||||||| ||| Sbjct 773895 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGGCCAGGCATTAGACCCCTCTTT 773837 Query 117352 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 |||| ||||||||| || ||| || || || |||||||| || ||||| ||| ||||| Sbjct 773836 TTCAGCCAATAAATGGCAGCA-AAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAA 773778 Query 117411 CGC 117413 || Sbjct 773777 TGC 773775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589788613754400