Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq21827 616 2e-171 seq25415 558 4e-154 >seq21827 Length=6214 Score = 616 bits (682), Expect = 2e-171 Identities = 738/997 (74%), Gaps = 4/997 (0%) Strand=Plus/Plus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | ||||| || || | || ||||| Sbjct 5022 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 5081 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || || | ||| | |||||| |||| || || |||| ||||| Sbjct 5082 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCAT 5140 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||| || || || || || ||||| || |||||||| || |||| || || | || Sbjct 5141 TGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 5200 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| || || |||||||| || ||||| |||| || || ||| | || || Sbjct 5201 TGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCGATAGGTTTGCATTT 5260 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| || || |||| || ||| | || || |||||||||| | Sbjct 5261 TTACCCGATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 5320 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | ||||| | |||| | | || |||||||||||||||||||| Sbjct 5321 GCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5380 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || || ||||||||||||| ||||| ||| || |||||||| ||||| || || | Sbjct 5381 TAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAG 5439 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 | || ||||||| ||| | ||||||| | |||||||| || ||||||| |||| Sbjct 5440 CTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGC 5499 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | || || || ||||| || ||||||| |||| |||| |||||||| ||||||||||||| Sbjct 5500 CTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCC 5559 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | |||||||| || |||||| | || ||||| ||||| |||||||| || || ||| | Sbjct 5560 TTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 5619 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| ||||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 5620 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 5679 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || | ||||||| || |||||||| ||||| |||||||| ||||| ||||| |||| Sbjct 5680 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTACAATATCGTAGCTGCTCATG 5739 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || || || |||||||||| ||||| ||||||||||| ||||| | |||| Sbjct 5740 GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACT 5799 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||||| || || |||||||| || || || ||||||||||| | || | ||||| | Sbjct 5800 TCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTA 5859 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| || ||| | || |||||||| |||||||| || | ||||| |||||||||||| Sbjct 5860 TGGCTTTTAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 5919 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || || ||||| || | ||||||| ||| ||||||||||||||||||| | Sbjct 5920 TAATTAATACCTGGGCTGATATTATCAACCGTGCTAACTTGGGTATGGAAGTTATGCATG 5979 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGC 180733 | ||||| ||||| |||||||| || || || || || Sbjct 5980 AACGTAACGCTCATAACTTCCCTCTAGATCTAGCTGC 6016 >seq25415 Length=1491 Score = 558 bits (618), Expect = 4e-154 Identities = 736/1015 (73%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| || ||||| || Sbjct 366 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 425 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| | || || || || ||| Sbjct 426 CTATTGCTCTTTCCTTGTGCCTATTTCGCCGTAGGGGGTTGGTTTACAGGTACAACCTTT 485 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCT 181602 || || || ||||| ||||| ||||| || |||||| | || || ||| || ||| | Sbjct 486 GTAACTTCATGGTATACCCATGGATTAGCAAGTTCCTATTTGGAAGGCTGC-AACTTCTT 544 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || || || || || || |||||| | | | | || ||| | | |||| ||||| Sbjct 545 AACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 604 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 |||||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 605 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 664 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || || ||||| || |||| || || ||||| ||| | | ||||||||||||||||| Sbjct 665 TGCTCTTCACGGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 724 Query 181783 -TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 ||| || | | ||||| || ||||| || || || |||||||| ||||| || || | Sbjct 725 ATCTGTTCA-ATTACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCGGTTTTTG 783 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| || || ||||| || || || || |||||||||||||||| ||||| | Sbjct 784 TTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCAAGTTTTG 843 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 |||| ||||| || || || ||| | ||||| |||| || |||||||||||||| | | Sbjct 844 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 903 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 | || || ||||||||||| |||||||| | |||| | || | || | || |||| Sbjct 904 ACCCATTTCATATGATGGGAGTTGCTGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 963 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 | |||| ||||| || |||||| | | | |||| ||||| |||||||| ||| | Sbjct 964 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGGG 1023 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | || | ||||||||| |||||||| ||||||||||| || || |||||||| |||| Sbjct 1024 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 1083 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 182201 | || ||||| || |||| ||| |||||| | ||||| |||||||||||| | |||| Sbjct 1084 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 1143 Query 182202 TTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 182261 | || || | ||| | |||| ||| | | || | | ||||| || || || || | Sbjct 1144 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCCCTGAATCTAC 1203 Query 182262 GTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGT 182321 |||| |||||||| || || || |||||| | ||| | ||||| || || || ||||| | Sbjct 1204 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 1263 Query 182322 TCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATC 182381 ||||||| || || |||||||| || |||||| | ||||| ||| | || | |||| Sbjct 1264 TCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 1323 Query 182382 AACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | || ||||| ||| || | ||||||||||| || ||||| | || ||||| || Sbjct 1324 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610197963242400