Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq21827 682 0.0 seq25415 569 2e-157 >seq21827 Length=6214 Score = 682 bits (756), Expect = 0.0 Identities = 731/961 (76%), Gaps = 4/961 (0%) Strand=Plus/Plus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || |||| ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 5058 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 5116 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 ||||| || || |||| ||| | ||||| || || || || || ||||||||||||| Sbjct 5117 T-TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTG 5175 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989 |||||||| | || || || | ||||| ||||| || || |||||||| || |||| Sbjct 5176 AACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTA 5235 Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049 | || || || ||| | || || ||||| || |||||||| || ||| ||||||||| Sbjct 5236 CTTCTGCAGCGATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAAT 5295 Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109 || | ||||| |||||||||| | || | || | ||||| | | ||| | | Sbjct 5296 GGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTT 5355 Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169 || |||||||||||||||||||| || |||||| |||||||| ||||||||| || Sbjct 5356 GTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTG 5415 Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229 |||| || || || || |||||||| || | || || ||| || ||||||| | |||| Sbjct 5416 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTC 5475 Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289 |||| || ||||||| ||||| || || |||||||| || ||||||| |||| | | Sbjct 5476 AAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 5535 Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349 | |||||||| |||||||||||||| |||||||| || || ||| | ||||| ||||| | Sbjct 5536 TATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 5595 Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409 |||| ||||| || || |||||||| ||||| ||||| |||| |||||| || | Sbjct 5596 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 5655 Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469 | |||||||| |||| ||| || || | ||||||| || |||||||| ||||||| Sbjct 5656 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 5715 Query 164470 CATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCAT 164529 | ||||| || || || ||||| ||||| ||||| || ||||||||||||| ||| | Sbjct 5716 CCTACAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 5775 Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589 |||||||||| ||||| || ||||||||||| ||||| |||||||| || || || |||| Sbjct 5776 TCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGT 5835 Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 164649 |||| || | ||| || ||| ||||| || ||| | || |||||||| |||||||| | Sbjct 5836 TCACTGCTTTAGGTATTAGCACTATGGCTTTTAACTTAAATGGTTTCAATTTCAACCAAT 5895 Query 164650 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTG 164709 | | | ||| |||| |||||||| | || || ||||| || || ||||||| ||| Sbjct 5896 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATCAACCGTGCTA 5955 Query 164710 GTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTG 164769 ||||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||| Sbjct 5956 ACTTGGGTATGGAAGTTATGCATGAACGTAACGCTCATAACTTCCCTCTAGATCTAGCTG 6015 Query 164770 c 164770 | Sbjct 6016 C 6016 >seq25415 Length=1491 Score = 569 bits (630), Expect = 2e-157 Identities = 731/1003 (73%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| |||||||| || || | || ||| Sbjct 378 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 437 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | || | || |||||| |||| || || || || | || ||| Sbjct 438 CCTTGTGCCTATTTCGCCGTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 497 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGT 165384 ||||| || || || |||||||||||| |||| || ||||| ||| | || || ||||| Sbjct 498 TATACCCATGGATTAGCAAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCCGCAGT 556 Query 165385 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 165444 ||||||||| || | | | | || ||| | || | || ||||| ||||| || || Sbjct 557 TTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGCCCTGAAGCACA 616 Query 165445 AGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 165504 ||| ||||| | ||| ||| | || || || ||| ||||||| || || ||||| Sbjct 617 AGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTTCACGG 676 Query 165505 GGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTA 165563 ||||||| ||||| ||||||||| | ||||| |||||| | || || ||| || | Sbjct 677 CGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 735 Query 165564 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 165623 | || || || ||||| || || ||||| ||||| || || ||||||||| || || | Sbjct 736 TACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCGGTTTTTGTTTCTGTATTCC 795 Query 165624 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAA 165683 | || || || || ||||| || ||||||| || || ||| ||| || || || || | Sbjct 796 TGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCAAGTTTTGGTGTAGCGGCTA 855 Query 165684 TCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATA 165743 | || | ||| | ||||| | ||||| || ||||| ||||| ||||| || ||||||| Sbjct 856 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 915 Query 165744 TGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAG 165803 ||||||| ||||| || | |||| | ||| |||| | || || ||||||| ||| | Sbjct 916 TGATGGGAGTTGCTGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCG 975 Query 165804 TAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTA 165863 |||| |||||| | | | |||||||||| | ||||||||| ||| ||| ||| || | | Sbjct 976 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGGGCTTTTAACCCAA 1035 Query 165864 CTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCG 165923 |||||| |||||||| || |||||||| || || ||||| || ||||| || ||||| | Sbjct 1036 CTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTG 1095 Query 165924 GTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGG 165983 | |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 1096 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 1155 Query 165984 GTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 166043 || | |||| ||| | | || | | ||||| || || || || ||||| ||||||| Sbjct 1156 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCCCTGAATCTACGTGCCTATGACT 1215 Query 166044 TTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAA 166103 | || || || || ||| | ||||| ||||| || || ||||| || |||||||| |||| Sbjct 1216 TCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACCAAAA 1275 Query 166104 ACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGA 166163 | |||||||| || |||||| ||||||||||| |||| | ||||| || ||||| | Sbjct 1276 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 1335 Query 166164 ACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || || | |||||||| || ||||| || | || ||||| || Sbjct 1336 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556743381746400