Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq18889 444 7e-120
seq19222 84.2 2e-11
>seq18889
Length=1054283
Score = 444 bits (492), Expect = 7e-120
Identities = 1032/1558 (66%), Gaps = 37/1558 (2%)
Strand=Plus/Plus
Query 47289 CGTTCAGTTAATGTTTTTAAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACT 47348
|||||||||| || | ||||| || || ||||| ||||| |||||||| || |||
Sbjct 964020 CGTTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACT 964079
Query 47349 CTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGA 47408
|| || | || || || || || || | ||| || || ||||| || |||| |||||
Sbjct 964080 CTGCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGC 964139
Query 47409 GCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGT 47468
|| || || ||||| ||||| | || | || | ||| || || || || | |||
Sbjct 964140 GCTGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCA 964199
Query 47469 ATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCA 47528
|||| | ||||| ||||| || || | || || | ||| | ||
Sbjct 964200 ATCTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCG 964259
Query 47529 TATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGT 47588
||||| ||||| || |||| | || || || ||||| | |||||| |||| |
Sbjct 964260 TATTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTT 964319
Query 47589 TTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATG 47648
| || | || || ||||| |||| ||| ||| || || |||||||| || | ||
Sbjct 964320 TCTGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATA 964379
Query 47649 TTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCC 47708
|| || | ||||| || |||||| ||||| || | ||||||
Sbjct 964380 TTCAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCA 964439
Query 47709 AATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGT 47768
| || || ||||| || |||||||| || || || || ||| ||| ||||| ||
Sbjct 964440 AGACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGA 964499
Query 47769 AATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATT 47828
| ||| || | ||| || || || || ||||| ||| ||||||
Sbjct 964500 ACTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTT------------ACAATT 964547
Query 47829 TCTCTTAAT-------------TTATTAAAATCAAACTTG--TTATTTA-TAACAAACCT 47872
|| ||| | || || |||||||| || || | | ||||| || |
Sbjct 964548 ACT-TTAGTGACTGAGGCAAGCTTTTTGAAATCAAAGGTGCGTTCTGGAGTAACATACAT 964606
Query 47873 ATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT-TTGGATTAGTATATTGTA 47931
|| || || || || || | ||||| || ||||| |||| || | || ||||| | |
Sbjct 964607 GTTGAGAGCAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT-GTATACTCCA 964665
Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991
|| |||| || | |||| |||||||| || |||||||| || || ||| |
Sbjct 964666 CAATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCC 964725
Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051
||||||| || || ||||| | ||| |||||||||| |||||| ||||||| || ||||
Sbjct 964726 TGTTACAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGA 964785
Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTAT 48110
| | | ||| || | |||||| | || ||| | || || || ||||| |||
Sbjct 964786 TGGCATACCACACCTGCTGAGCCTTGACCACCCGCTTCA-CTCTACCCTCCTGTTCATAT 964844
Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATT 48169
|| || | ||||||||| || ||||| | ||| | ||| |||||||| || ||| |
Sbjct 964845 CGTGTGTACAGCTTCTCAAACTCCTCCCCCCA-ACACTCATCCAACCCAGGGCACTCACT 964903
Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229
||||||||||| ||||| |||| | |||| ||||| |||| || | || || ||
Sbjct 964904 GGGACACATCAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGAT 964963
Query 48230 CCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288
||| || || ||| || | || | | || | || || || ||| | ||| | || |
Sbjct 964964 CCATAGGGC-ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCA 965022
Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348
| ||||||||||| | | |||| |||||||| || || || || || | |||| |
Sbjct 965023 GCTCAAGAAAGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCG 965082
Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408
|||||||||| || ||||| || | ||| | ||||| ||||| || ||||| | ||| |
Sbjct 965083 GTCGTTTATTGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCG 965142
Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATAT 48468
| |||| ||||||||| ||||||| ||||| | ||| |||||||| | | ||| |||
Sbjct 965143 GCACAAGACCATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATAC 965202
Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528
|||| || | ||| || || ||||| |||||| || |||||||| |||| || |
Sbjct 965203 AGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTG 965262
Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588
| |||||||| || || || || ||||| |||| | || || || || || | |
Sbjct 965263 TGTCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCT 965322
Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648
| || ||| |||| || || | || ||||| |||||| | ||||| ||||| |
Sbjct 965323 GGGGTCTGTTAGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAG 965382
Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATA 48708
| | || || || || ||||| | | ||||||||| | | || || || | || ||
Sbjct 965383 ACAGCAGGTTGTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTA 965442
Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATG 48768
| | ||| | ||| | || || | ||| | | ||| ||| ||||||| | || |
Sbjct 965443 CTCTCATGAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAG 965502
Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
| || | |||||||| ||||| | ||||| ||||| || |||||| ||| ||
Sbjct 965503 AGCGCTCTAGCGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTAT 965560
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| ||||| || ||||| || || ||||| ||| | || |||| |||||||||||
Sbjct 963700 TCCAACCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 963759
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| || ||||| ||||| || || | ||||| | || || ||||| | | | | |
Sbjct 963760 TTAGGGATTGGCTCTGGTCGATGTAGGCACCGCGGTCGGCAGCCATCTTGAGTACAGTCT 963819
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220
| |||| ||| ||||| ||||||||||| | || || | || |||||||
Sbjct 963820 TCTGTGATATTTCCCAAACTGTTTTATATAACTGCTTTAAATCATCTGGGA 963870
>seq19222
Length=928746
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/119 (76%), Gaps = 4/119 (3%)
Strand=Plus/Minus
Query 18637 GAATTC--TCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTCGGCAACTCTTTT 18692
|||||| | | ||||||| | ||| || || | ||||||||||| || || | |||
Sbjct 774590 GAATTCAGTGTCCATTAGACCTGGCATAACACCAAACTTTTGATATTCTGCCACACGTTT 774531
Query 18693 TTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTT 18751
||||||||| || |||||||| |||| || || | ||||| || |||||||||||||
Sbjct 774530 TTCAAAGAAGTTGGTTTTTCCTTCTAGGGAGATCGACTCCATGAAGTCAAATGGATTTT 774472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561925693058400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |