Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq18889 444 7e-120 seq19222 84.2 2e-11 >seq18889 Length=1054283 Score = 444 bits (492), Expect = 7e-120 Identities = 1032/1558 (66%), Gaps = 37/1558 (2%) Strand=Plus/Plus Query 47289 CGTTCAGTTAATGTTTTTAAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACT 47348 |||||||||| || | ||||| || || ||||| ||||| |||||||| || ||| Sbjct 964020 CGTTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGACAGGACT 964079 Query 47349 CTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGA 47408 || || | || || || || || || | ||| || || ||||| || |||| ||||| Sbjct 964080 CTGCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCAAGTATTTGC 964139 Query 47409 GCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGT 47468 || || || ||||| ||||| | || | || | ||| || || || || | ||| Sbjct 964140 GCTGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGCTGTTCCTCACACCGTGTTTAGCA 964199 Query 47469 ATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCA 47528 |||| | ||||| ||||| || || | || || | ||| | || Sbjct 964200 ATCTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCG 964259 Query 47529 TATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGT 47588 ||||| ||||| || |||| | || || || ||||| | |||||| |||| | Sbjct 964260 TATTGCAGAATGCCCCTACTCACTGGGGAGCCTGGGTATGTCTCATAAGGCCCGTCCTTT 964319 Query 47589 TTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATG 47648 | || | || || ||||| |||| ||| ||| || || |||||||| || | || Sbjct 964320 TCTGCCAACTCGCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTTTCAAAGATCTGGATA 964379 Query 47649 TTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCC 47708 || || | ||||| || |||||| ||||| || | |||||| Sbjct 964380 TTCAGCAGCTGGGCTTCAGAACTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCA 964439 Query 47709 AATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGT 47768 | || || ||||| || |||||||| || || || || ||| ||| ||||| || Sbjct 964440 AGACCCTGCACACCGATCCCAATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGA 964499 Query 47769 AATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATT 47828 | ||| || | ||| || || || || ||||| ||| |||||| Sbjct 964500 ACTGGGTAGTAGTTAATGTCAATGATCTTATTGAGATTTCTT------------ACAATT 964547 Query 47829 TCTCTTAAT-------------TTATTAAAATCAAACTTG--TTATTTA-TAACAAACCT 47872 || ||| | || || |||||||| || || | | ||||| || | Sbjct 964548 ACT-TTAGTGACTGAGGCAAGCTTTTTGAAATCAAAGGTGCGTTCTGGAGTAACATACAT 964606 Query 47873 ATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT-TTGGATTAGTATATTGTA 47931 || || || || || || | ||||| || ||||| |||| || | || ||||| | | Sbjct 964607 GTTGAGAGCAATTGAGGCCAAGTTACAGACGGCTACTTCATCTTTGCTT-GTATACTCCA 964665 Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991 || |||| || | |||| |||||||| || |||||||| || || ||| | Sbjct 964666 CAATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCC 964725 Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 ||||||| || || ||||| | ||| |||||||||| |||||| ||||||| || |||| Sbjct 964726 TGTTACAGGCATCTTTGTACAACATGTAAGGTGTTCCCGTTTCTGTCTGAGACTCTATGA 964785 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTAT 48110 | | | ||| || | |||||| | || ||| | || || || ||||| ||| Sbjct 964786 TGGCATACCACACCTGCTGAGCCTTGACCACCCGCTTCA-CTCTACCCTCCTGTTCATAT 964844 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATT 48169 || || | ||||||||| || ||||| | ||| | ||| |||||||| || ||| | Sbjct 964845 CGTGTGTACAGCTTCTCAAACTCCTCCCCCCA-ACACTCATCCAACCCAGGGCACTCACT 964903 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 ||||||||||| ||||| |||| | |||| ||||| |||| || | || || || Sbjct 964904 GGGACACATCAAAGACCAGTCCTGGTTGTTTTCCACTCTCTTCATGAACAGGTCAGGGAT 964963 Query 48230 CCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 ||| || || ||| || | || | | || | || || || ||| | ||| | || | Sbjct 964964 CCATAGGGC-ATAGAAGAGGTCTCGCGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCA 965022 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 | ||||||||||| | | |||| |||||||| || || || || || | |||| | Sbjct 965023 GCTCAAGAAAGTCAAACACATCAAAGTGCCATGGCTCCAAGTAAATGGCAAAGGCACCCG 965082 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 |||||||||| || ||||| || | ||| | ||||| ||||| || ||||| | ||| | Sbjct 965083 GTCGTTTATTGCCACCTTGGTCCACATAGCGTGCAGTGTTGTTGTACACTCTCAGCATCG 965142 Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATAT 48468 | |||| ||||||||| ||||||| ||||| | ||| |||||||| | | ||| ||| Sbjct 965143 GCACAAGACCATTTGAGTTACCATTTGTTCCAGCAATGTAACTTCCTGTTGATCTAATAC 965202 Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 |||| || | ||| || || ||||| |||||| || |||||||| |||| || | Sbjct 965203 AGCTAACTGCTACACCAATCCCTCCTGCAGATTTAGAGATAAGAGCACATTGTTTCAGTG 965262 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 | |||||||| || || || || ||||| |||| | || || || || || | | Sbjct 965263 TGTCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCT 965322 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648 | || ||| |||| || || | || ||||| |||||| | ||||| ||||| | Sbjct 965323 GGGGTCTGTTAGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAG 965382 Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATA 48708 | | || || || || ||||| | | ||||||||| | | || || || | || || Sbjct 965383 ACAGCAGGTTGTAGGTCTCAATGGCTGCATCTATATCAGAGTTGTGGATTCCGACAGCTA 965442 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATG 48768 | | ||| | ||| | || || | ||| | | ||| ||| ||||||| | || | Sbjct 965443 CTCTCATGAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAAGTAAG 965502 Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 | || | |||||||| ||||| | ||||| ||||| || |||||| ||| || Sbjct 965503 AGCGCTCTAGCGTTTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTAT 965560 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| || ||||| || || ||||| ||| | || |||| ||||||||||| Sbjct 963700 TCCAACCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 963759 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || ||||| ||||| || || | ||||| | || || ||||| | | | | | Sbjct 963760 TTAGGGATTGGCTCTGGTCGATGTAGGCACCGCGGTCGGCAGCCATCTTGAGTACAGTCT 963819 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | |||| ||| ||||| ||||||||||| | || || | || ||||||| Sbjct 963820 TCTGTGATATTTCCCAAACTGTTTTATATAACTGCTTTAAATCATCTGGGA 963870 >seq19222 Length=928746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/119 (76%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 18637 GAATTC--TCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTCGGCAACTCTTTT 18692 |||||| | | ||||||| | ||| || || | ||||||||||| || || | ||| Sbjct 774590 GAATTCAGTGTCCATTAGACCTGGCATAACACCAAACTTTTGATATTCTGCCACACGTTT 774531 Query 18693 TTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTT 18751 ||||||||| || |||||||| |||| || || | ||||| || ||||||||||||| Sbjct 774530 TTCAAAGAAGTTGGTTTTTCCTTCTAGGGAGATCGACTCCATGAAGTCAAATGGATTTT 774472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561925693058400