Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3171 156 3e-32 seq1110 118 9e-21 seq10742 102 7e-16 seq24987 100 2e-15 >seq3171 Length=1257762 Score = 156 bits (172), Expect = 3e-32 Identities = 343/511 (67%), Gaps = 16/511 (3%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || || ||||| | || |||| ||||| || || || ||||| || || || || | Sbjct 1255605 TGCGTGGGTGTCTTCCAGCATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAATCGC 1255546 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || ||||||| | ||||| || || || | ||| ||||||| ||||| ||| Sbjct 1255545 ACCACCCCCAGTTATGTTGCCTTCACTGACACAGAGCGGTTAATTGGTGACGCAGCCAAA 1255486 Query 550145 TATCAAG---CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 | || | ||| || || || | || || || |||||||| || | | || || Sbjct 1255485 AACCAGGTGGCCA-TG--AACCCGATTAACACCATCTTTGATGCCAAGAGACTCATAGGG 1255429 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 |||| ||| |||| | ||| || || || ||||||| |||||||||| || | | Sbjct 1255428 AGAAAATTTGATGACCATATTGTGCAAGCTGACATGAAGCTTTGGCCTTTCAAAGTCATC 1255369 Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAA-----T 550316 | || ||| || || | | |||| | |||| | | |||| | Sbjct 1255368 AGTGACAGTGGCAAGCCCAAAGTAGAAGTGGAGTACAAAGG-----TGAGACAAAGGCGT 1255314 Query 550317 TTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTT 550376 ||| |||||| |||| ||||| |||||||| | || ||||| ||| || || | Sbjct 1255313 TTTATCCAGAAGAAATCTCATCAATGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGT 1255254 Query 550377 TTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCAC 550436 | | || || ||| | ||||||| || || || || || ||||| || ||||| | Sbjct 1255253 ATTTGGGGCAGAGAGTGTCCAATGCAGTCATCACAGTCCCTGCTTATTTCAACGACTCCC 1255194 Query 550437 AACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCA 550496 | || ||||| || |||||||| ||| |||| |||| || ||||| || | || |||| Sbjct 1255193 AGCGCCAAGCCACAAAAGATGCCGGAGTTATTTCTGGCCTGAATGTGCTGAGAATCATCA 1255134 Query 550497 ATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||||| || || || || |||||||||| Sbjct 1255133 ATGAACCAACCGCAGCCGCTATTGCATATGG 1255103 Score = 134 bits (148), Expect = 1e-25 Identities = 440/681 (65%), Gaps = 2/681 (0%) Strand=Plus/Minus Query 551911 GAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAG 551970 |||| || || ||| | ||||| | | || ||||| | || ||| | | || ||| Sbjct 1254863 GAACGGCATGTGAACGCGCCAAGAGGACCCTATCATCCAGCACCCAAGCAAGCATCGAAA 1254804 Query 551971 TAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAG 552030 | || || ||| ||| |||||||| | | | || | || | | || | |||||||| Sbjct 1254803 TTGACTCTCTATATGAAGGAATTGACTTTTACACCTCAATCACTCGTGCTAGATTTGAAG 1254744 Query 552031 ATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATT 552090 | | || || ||||| || |||| | || ||||| || ||| |||| ||| Sbjct 1254743 AACTCAACTCAGACCTCTTCAGGGGAACACTAGACCCAGTTGAGAAAGCTTTACAAGACG 1254684 Query 552091 CAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTC 552150 | ||| | || || ||||| | | || || || || ||||||||||| || ||||||| Sbjct 1254683 CCAAGCTGGACAAGTCCAAGATCAACGACATCGTCCTGGTTGGTGGATCCACGAGAATTC 1254624 Query 552151 CTAAAATTCGCGAAAT-GTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTT 552209 ||||||| | || | | || ||| ||| ||||| | | || || |||| | Sbjct 1254623 CTAAAATCCAAAAACTACTGCAGGACTTCTTT-AATGGAAGGGAGTTGAACAAAAGCATC 1254565 Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || |||||||| || || |||||||| || || | || || ||||| || || | Sbjct 1254564 AACCCAGATGAAGCAGTGGCCTATGGAGCTGCGGTACAGGCTGCTATCCTGATGGGGGAC 1254505 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 || || || | || | | | | |||||||| |||| || ||| | || | Sbjct 1254504 ACCTCGGAGAATGTCCAGGACCTCCTTTTGCTAGATGTTGCTCCACTGTCTTTGGGCATT 1254445 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 ||||||| ||||| | ||||| | ||| | | || || || || || ||| Sbjct 1254444 GAAACAGCAGGAGGAGTAATGACCGCGTTGATCAAGCGTAACACCACCATCCCCACCAAA 1254385 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 || | | | || || || || || ||||| || | | ||| || || | ||| Sbjct 1254384 CAAACCCAAATCTTCTCCACCTACTCCGATAACCAGCCAGGTGTGCTCATCCAGGTGTTT 1254325 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 ||||| ||||| | |||||||| || || | || || | ||| | | || Sbjct 1254324 GAAGGTGAAAGGGCCATGACTAAAGACAACAACCTCCTCGGCAAATTTGACCTGACGGGG 1254265 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 || || || || || | ||||| ||||| |||||||| || ||||| || ||||| ||| Sbjct 1254264 ATCCCACCAGCCCCAAGAGGAGTCCCGCAGATTGAAGTAACATTCGACATTGATGCGAAT 1254205 Query 552570 GGAATTTTGAATGTGACTGCT 552590 || || | ||||| ||||| Sbjct 1254204 GGCATCCTCAATGTCTCTGCT 1254184 >seq1110 Length=1300725 Score = 118 bits (130), Expect = 9e-21 Identities = 108/135 (80%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| ||||||| || || || || |||||||| || || || || || ||||||| Sbjct 26315 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCAACCAAAGATG 26374 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||||||| |||||||| || ||||| ||||||||||| || || || || Sbjct 26375 CTGGAGCTATTGCTGGGCTTAATGTGCTGCGTATCATCAATGAACCAACAGCAGCAGCCA 26434 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 26435 TTGCCTATGG-CTTG 26448 >seq10742 Length=3397572 Score = 102 bits (112), Expect = 7e-16 Identities = 161/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || ||||| || || || || ||||| ||| | ||| || ||||| |||| |||| Sbjct 2148683 CTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGAG 2148740 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || || || || || ||||| || || ||||||||||||||||| | Sbjct 2148741 TGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGAATAC 2148800 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTC 563429 | ||||| ||||||||||| ||| || |||||| || ||| | || || || || Sbjct 2148801 CCTCTTTGTCTTGAATTTTGGCTTTCACATTCTCAATGGTGTCACT-TG-GTTCAACCTC 2148858 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| | || || ||||| || || ||||| || || ||||| Sbjct 2148859 CAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903 Score = 95.1 bits (104), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || ||||| || || || || ||||| ||| | ||| || ||||| |||| |||| Sbjct 2148911 CTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGAG 2148968 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || || || || |||||||| || || ||||| |||||||| || | Sbjct 2148969 TGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATAC 2149028 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| ||||| || || || || || |||||||| ||| | | | ||| | Sbjct 2149029 CTTCCTTATCCTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCA 2149088 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | ||||||||||| || || ||||| || || ||||| Sbjct 2149089 AAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCAT 2149131 >seq24987 Length=1398849 Score = 100 bits (110), Expect = 2e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| ||||| || || ||||| || || || || ||||| ||||||| Sbjct 197131 ATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGACAGGCTACAAAAGATG 197190 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | ||| ||| ||| |||||||||||| | |||||||| || || || |||||||| Sbjct 197191 CAGGAGTCATTTGTGGTCTTAATGTTCTTTGCATTATCAACGAGCCAACAGCTGCTGCTA 197250 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 197251 TTGCTTATGG 197260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027917829669400