Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201
4-12-02] 26,060 sequences; 701,696,780 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3171 156 3e-32
seq1110 118 9e-21
seq10742 102 7e-16
seq24987 100 2e-15
>seq3171
Length=1257762
Score = 156 bits (172), Expect = 3e-32
Identities = 343/511 (67%), Gaps = 16/511 (3%)
Strand=Plus/Minus
Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084
|| || ||||| | || |||| ||||| || || || ||||| || || || || |
Sbjct 1255605 TGCGTGGGTGTCTTCCAGCATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAATCGC 1255546
Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144
|| || || ||||||| | ||||| || || || | ||| ||||||| ||||| |||
Sbjct 1255545 ACCACCCCCAGTTATGTTGCCTTCACTGACACAGAGCGGTTAATTGGTGACGCAGCCAAA 1255486
Query 550145 TATCAAG---CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201
| || | ||| || || || | || || || |||||||| || | | || ||
Sbjct 1255485 AACCAGGTGGCCA-TG--AACCCGATTAACACCATCTTTGATGCCAAGAGACTCATAGGG 1255429
Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261
|||| ||| |||| | ||| || || || ||||||| |||||||||| || | |
Sbjct 1255428 AGAAAATTTGATGACCATATTGTGCAAGCTGACATGAAGCTTTGGCCTTTCAAAGTCATC 1255369
Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAA-----T 550316
| || ||| || || | | |||| | |||| | | |||| |
Sbjct 1255368 AGTGACAGTGGCAAGCCCAAAGTAGAAGTGGAGTACAAAGG-----TGAGACAAAGGCGT 1255314
Query 550317 TTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTT 550376
||| |||||| |||| ||||| |||||||| | || ||||| ||| || || |
Sbjct 1255313 TTTATCCAGAAGAAATCTCATCAATGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGT 1255254
Query 550377 TTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCAC 550436
| | || || ||| | ||||||| || || || || || ||||| || ||||| |
Sbjct 1255253 ATTTGGGGCAGAGAGTGTCCAATGCAGTCATCACAGTCCCTGCTTATTTCAACGACTCCC 1255194
Query 550437 AACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCA 550496
| || ||||| || |||||||| ||| |||| |||| || ||||| || | || ||||
Sbjct 1255193 AGCGCCAAGCCACAAAAGATGCCGGAGTTATTTCTGGCCTGAATGTGCTGAGAATCATCA 1255134
Query 550497 ATGAACCTACTGCTGCTGCACTTGCATATGG 550527
||||||| || || || || ||||||||||
Sbjct 1255133 ATGAACCAACCGCAGCCGCTATTGCATATGG 1255103
Score = 134 bits (148), Expect = 1e-25
Identities = 440/681 (65%), Gaps = 2/681 (0%)
Strand=Plus/Minus
Query 551911 GAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAG 551970
|||| || || ||| | ||||| | | || ||||| | || ||| | | || |||
Sbjct 1254863 GAACGGCATGTGAACGCGCCAAGAGGACCCTATCATCCAGCACCCAAGCAAGCATCGAAA 1254804
Query 551971 TAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAG 552030
| || || ||| ||| |||||||| | | | || | || | | || | ||||||||
Sbjct 1254803 TTGACTCTCTATATGAAGGAATTGACTTTTACACCTCAATCACTCGTGCTAGATTTGAAG 1254744
Query 552031 ATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATT 552090
| | || || ||||| || |||| | || ||||| || ||| |||| |||
Sbjct 1254743 AACTCAACTCAGACCTCTTCAGGGGAACACTAGACCCAGTTGAGAAAGCTTTACAAGACG 1254684
Query 552091 CAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTC 552150
| ||| | || || ||||| | | || || || || ||||||||||| || |||||||
Sbjct 1254683 CCAAGCTGGACAAGTCCAAGATCAACGACATCGTCCTGGTTGGTGGATCCACGAGAATTC 1254624
Query 552151 CTAAAATTCGCGAAAT-GTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTT 552209
||||||| | || | | || ||| ||| ||||| | | || || |||| |
Sbjct 1254623 CTAAAATCCAAAAACTACTGCAGGACTTCTTT-AATGGAAGGGAGTTGAACAAAAGCATC 1254565
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| |||||||| || || |||||||| || || | || || ||||| || || |
Sbjct 1254564 AACCCAGATGAAGCAGTGGCCTATGGAGCTGCGGTACAGGCTGCTATCCTGATGGGGGAC 1254505
Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329
|| || || | || | | | | |||||||| |||| || ||| | || |
Sbjct 1254504 ACCTCGGAGAATGTCCAGGACCTCCTTTTGCTAGATGTTGCTCCACTGTCTTTGGGCATT 1254445
Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389
||||||| ||||| | ||||| | ||| | | || || || || || |||
Sbjct 1254444 GAAACAGCAGGAGGAGTAATGACCGCGTTGATCAAGCGTAACACCACCATCCCCACCAAA 1254385
Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449
|| | | | || || || || || ||||| || | | ||| || || | |||
Sbjct 1254384 CAAACCCAAATCTTCTCCACCTACTCCGATAACCAGCCAGGTGTGCTCATCCAGGTGTTT 1254325
Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509
||||| ||||| | |||||||| || || | || || | ||| | | ||
Sbjct 1254324 GAAGGTGAAAGGGCCATGACTAAAGACAACAACCTCCTCGGCAAATTTGACCTGACGGGG 1254265
Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569
|| || || || || | ||||| ||||| |||||||| || ||||| || ||||| |||
Sbjct 1254264 ATCCCACCAGCCCCAAGAGGAGTCCCGCAGATTGAAGTAACATTCGACATTGATGCGAAT 1254205
Query 552570 GGAATTTTGAATGTGACTGCT 552590
|| || | ||||| |||||
Sbjct 1254204 GGCATCCTCAATGTCTCTGCT 1254184
>seq1110
Length=1300725
Score = 118 bits (130), Expect = 9e-21
Identities = 108/135 (80%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| ||||||| || || || || |||||||| || || || || || |||||||
Sbjct 26315 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCAACCAAAGATG 26374
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| ||||||||| |||||||| || ||||| ||||||||||| || || || ||
Sbjct 26375 CTGGAGCTATTGCTGGGCTTAATGTGCTGCGTATCATCAATGAACCAACAGCAGCAGCCA 26434
Query 550518 TTGCATATGGACTTG 550532
|||| ||||| ||||
Sbjct 26435 TTGCCTATGG-CTTG 26448
>seq10742
Length=3397572
Score = 102 bits (112), Expect = 7e-16
Identities = 161/225 (72%), Gaps = 8/225 (4%)
Strand=Plus/Plus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
|| ||||| || || || || ||||| ||| | ||| || ||||| |||| ||||
Sbjct 2148683 CTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGAG 2148740
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| || || || || || ||||| || || ||||||||||||||||| |
Sbjct 2148741 TGCGGCCATCTTCTAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGATCAGGAGGAATAC 2148800
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTC 563429
| ||||| ||||||||||| ||| || |||||| || ||| | || || || ||
Sbjct 2148801 CCTCTTTGTCTTGAATTTTGGCTTTCACATTCTCAATGGTGTCACT-TG-GTTCAACCTC 2148858
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| ||| | || || ||||| || || ||||| || || |||||
Sbjct 2148859 CAAAGTGATGGTCTTCCCAGTCAGGGTCTTAACAAAGATCTGCAT 2148903
Score = 95.1 bits (104), Expect = 1e-13
Identities = 156/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
|| ||||| || || || || ||||| ||| | ||| || ||||| |||| ||||
Sbjct 2148911 CTCAGACGTAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGAG 2148968
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| || || || || |||||||| || || ||||| |||||||| || |
Sbjct 2148969 TGCGGCCATCTTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATAC 2149028
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431
|||| ||||| || || || || || |||||||| ||| | | | ||| |
Sbjct 2149029 CTTCCTTATCCTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCA 2149088
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| | ||||||||||| || || ||||| || || |||||
Sbjct 2149089 AAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCAT 2149131
>seq24987
Length=1398849
Score = 100 bits (110), Expect = 2e-15
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| ||||| || || ||||| || || || || ||||| |||||||
Sbjct 197131 ATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGACAGGCTACAAAAGATG 197190
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| ||| ||| ||| |||||||||||| | |||||||| || || || ||||||||
Sbjct 197191 CAGGAGTCATTTGTGGTCTTAATGTTCTTTGCATTATCAACGAGCCAACAGCTGCTGCTA 197250
Query 550518 TTGCATATGG 550527
|||| |||||
Sbjct 197251 TTGCTTATGG 197260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027917829669400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |