Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq21827 506 6e-139 >seq21827 Length=6214 Score = 506 bits (560), Expect = 6e-139 Identities = 706/987 (72%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 || |||||||| || |||||||| ||||| || ||||| ||||| ||||||||||| | | Sbjct 6016 GCAGCTAGATCTAGAGGGAAGTTATGAGCGTTACGTTCATGCATAACTTCCATACCCAAG 5957 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACT 5311 || |||||||| | | ||| ||||| || || | | ||| | ||||| || Sbjct 5956 TTAGCACGGTTGATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA 5897 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| || || || || | ||||||||||||||| || || | || || Sbjct 5896 GATTGGTTGAAATTGAAACCATTTAAGTTAAAAGCCATAGTGCTAATACCTAAAGCAGTG 5837 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| |||||||| |||||| ||| ||||| Sbjct 5836 AACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTG 5777 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||||||| |||||||| | || ||||| || |||||||| || || || || || Sbjct 5776 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAG 5717 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 |||||||||||||| |||||| | || || | || ||| | | || ||||| Sbjct 5716 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 5657 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 | || | |||||| || | |||||||||||| ||| | | || |||||| Sbjct 5656 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 5597 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| || || | |||||| || || ||||||||||| ||||| || || |||||| Sbjct 5596 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAT 5537 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 || | ||| ||||| |||||||||||||| || ||||||||||| ||| || ||||| Sbjct 5536 ACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCT 5477 Query 5732 TGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 || || | || || | || || || | ||||| | || ||||| || ||||||||||| Sbjct 5476 TGACCAATTGGATAGATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGC 5418 Query 5791 TACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 || |||||| || ||||| || | | | ||||||||||||| | || |||| || Sbjct 5417 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 5358 Query 5851 AGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAG 5910 | || | ||||| | ||||| | || | || | || || || |||||||| | Sbjct 5357 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 5298 Query 5911 CCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGA 5970 ||||||||| | || |||||||| || || || || || || || || || || Sbjct 5297 CCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATCGCTGCAGA 5238 Query 5971 GCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGG 6030 | || | || ||| || || || || ||||||||||| ||||||||||| | || || Sbjct 5237 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 5178 Query 6031 TTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGT 6090 |||||| || || || || || || || || ||||| | ||| || | |||||| ||| Sbjct 5177 TTCACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA 5118 Query 6091 AGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 ||||||||| || | | || ||||| || ||||||||||| || | || || ||||| Sbjct 5117 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 5058 Query 6151 GTTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| || | ||||| |||||| Sbjct 5057 TTCAGTGCTGGTTATCCAGTTACAGAA 5031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152602360673160