Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq21827 497 3e-136 >seq21827 Length=6214 Score = 497 bits (550), Expect = 3e-136 Identities = 700/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| || ||||||||||| || |||||||| ||||||||||||||||| || |||| Sbjct 6013 GCTAGATCTAGAGGGAAGTTATGAGCGTTACGTTCATGCATAACTTCCATACCCAAGTTA 5954 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | ||| |||||||| || | || | || | |||||| || || Sbjct 5953 GCACGGTTGATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 5894 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | ||||||||||||||| | || | ||| || | | Sbjct 5893 TGGTTGAAATTGAAACCATTTAAGTTAAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 5834 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| |||||||| |||||| ||| || || || Sbjct 5833 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 5774 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || || || || Sbjct 5773 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTGTAGGTT 5714 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 5713 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 5654 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 5653 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 5594 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | ||| || || || ||||||||||| ||||| || || || || ||| Sbjct 5593 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 5534 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| || |||||||| || || || || ||||||||||| ||||| || || ||||| Sbjct 5533 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 5474 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| || |||| ||||| |||||| || ||||||||||| |||||||| || ||| Sbjct 5473 CCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 5414 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | ||||||||||||| | || |||| ||| Sbjct 5413 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 5354 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | |||||| | ||||| || | ||| || ||||| || || ||||| Sbjct 5353 GCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAT 5294 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | || || |||||||| || ||||| || || | ||| || || ||| | Sbjct 5293 TCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATCGCTGCAGAAGTA 5234 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || || ||||||||||| |||| | ||| || ||||| ||| Sbjct 5233 GGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 5174 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || ||||| ||||||| || || || | |||| | | | Sbjct 5173 CGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 5114 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 5113 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 5054 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||||| ||| || Sbjct 5053 GTGCTGGTTATCCAGTTACAGAA 5031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151946563680560