Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq16203 114 1e-20 >seq16203 Length=1080995 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || ||||||||||| || || | || ||||| || || || || Sbjct 991562 TAGTCCTGTGATGTGGGCGATCATGTACGTTAGAAGTGCATAACTGGCAATATTGAAAGG 991503 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 ||| || ||||||||||| || || | ||| || ||||| || || ||||| || || | Sbjct 991502 TACTCCCAGCCCCATGTCACCAGAGCGCTGATAAAGCTGGCAGGACAGCTCACCATCACA 991443 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 ||| || |||||||| | | ||||| || || ||||||||| Sbjct 991442 CACATAGAACTGACAAAGAGCATGGCATGGGGGCAGAGCCATG 991400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 30157 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30216 ||||||||||| || || || |||||||| || || || || || || ||||||||||| Sbjct 991094 GTGTACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCC 991035 Query 30217 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 || | | || || | ||||||| || || | || || ||||| ||||| ||| Sbjct 991034 TCTCGATTAGTAAATCCATTGTTGTCCAGGAATTCACGAGACCCATTGGCATCCCAAATC 990975 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 || ||||| || | |||||||||||||| || || || || Sbjct 990974 TTCACCCCTTTTGCAGAGAGCTCTTTGGAATTGGTTGATCC 990934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408487820496380