Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmus_20magnuspinnatus_20[genbank_20GCA_5F000787105.1_20201 4-12-02] 26,060 sequences; 701,696,780 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq18889 257 3e-63 seq20909 194 3e-44 seq24544 187 5e-42 seq19395 163 5e-35 seq3913 141 2e-28 seq22773 93.3 8e-14 seq20084 89.7 1e-12 seq20831 87.8 3e-12 >seq18889 Length=1054283 Score = 257 bits (284), Expect = 3e-63 Identities = 969/1503 (64%), Gaps = 48/1503 (3%) Strand=Plus/Plus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCTCC-AGGCACTTGACCAGGTGAGGGTTGACTA 212916 ||| ||||||||||| || |||| | || ||| ||| | ||| || ||||| || | Sbjct 963998 CATCTCCTCGTTCCACAGCCCCC-GTTCAGTTAGGTCCTTCAGCAGATGTGGGTTTACAA 964056 Query 212917 TCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGC 212976 |||| || || || || || || || | ||| | ||| ||||||| |||||| Sbjct 964057 TCTGAAACTCTCCAGACAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGG 964116 Query 212977 TCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGAC 213036 ||| ||||| || || || || || ||| |||||||||||| || |||| || || | Sbjct 964117 ACTCATTGTTGCCAAGTATTTGCGCTGTGGAGGCTGTGGGCATAGGGGCCAACAACAGGC 964176 Query 213037 TGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAG 213096 |||||||||| ||||| | | || | |||| ||||||||| ||| Sbjct 964177 TGTTCCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAG 964236 Query 213097 ACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGC 213156 | ||| ||| |||||||| | |||| ||||| | ||||| ||| Sbjct 964237 TGGGCACCTTTTCC---------CACATGTCGTATTGCAGAATGCCCCTACTCACTGGGG 964287 Query 213157 TGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGG 213216 ||| |||| | || || || | || | |||| ||||||| |||| ||||| Sbjct 964288 AGCCTGGGTATGTCTCATAAGGCCCGTCCTTTTCTGCCAACTCGCAGCTTGCCTCCAGGG 964347 Query 213217 CAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTG- 213275 |||| ||||||||||||||||| |||| | || ||| || ||| || | || | Sbjct 964348 CAGCATAGTAGATGGTTTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGA--ACTTTC 964405 Query 213276 AAGGGCATCAT-CATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGG 213334 || | || | |||| | ||| |||| || || ||||| || ||||| || || || Sbjct 964406 AAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCGATCCCAATTGG 964465 Query 213335 TCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAG----GGGTAAAAGTTGCAGTCGA 213390 ||||| | | ||| || || | || || || | ||||| |||| ||| | Sbjct 964466 CCTGTGGCGCTTGTTTGAATT----CTCTGCTTCAGGAACTGGGTAGTAGTTAATGTCAA 964521 Query 213391 TGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGA 213450 ||||||| ||||| || | ||||| ||||| ||| || | | | || | Sbjct 964522 TGATCTTATTGAGATTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAATCAA 964581 Query 213451 ACACGTAGCCCCCGTCCTGCACAAACT--CAGGC--AGGGCGATGCTGGCCAGGTTGCAA 213506 | | ||| ||| | ||| || | || || || ||||| ||| || Sbjct 964582 AGGTG-------CGTTCTGGAGTAACATACATGTTGAGAGCAATTGAGGCCAAGTTACAG 964634 Query 213507 ACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGG 213566 ||||| || || | | ||| ||||||| ||||| ||||||| ||| |||||| | Sbjct 964635 ACGGCTACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTG 964694 Query 213567 ATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAG 213626 |||||||||| ||||| ||||| ||| ||| | ||| ||||| | |||||| Sbjct 964695 ATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAA 964754 Query 213627 GGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGA 213684 || | || || ||| ||| ||| | | || ||| ||| | | | ||||||| Sbjct 964755 GGTGTTCCCGTTTCTGTCTGAGACTCTATGAT--GGCATACCACACCTGCTGAGCCTTGA 964812 Query 213685 CCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGT 213744 |||||||| | || || | | | || || || ||| |||| | || || | Sbjct 964813 CCACCCGCTTCACT-CTACCCTCCTGT--TCATATCGTGTGTACAGCTTCTCAAACTCCT 964869 Query 213745 GGCCCCAGACCCTG-TCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG 213803 ||||| || || |||| || || || ||||||||| | ||||||| | Sbjct 964870 CCCCCCA-ACACTCATCCAACCCAGGGCACTCACTGGGACACATCAAAGACCAGTCCTGG 964928 Query 213804 TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863 | | | ||||||| |||||||||||| |||| ||| || || ||| ||||| | Sbjct 964929 TTGTTTTCCACTCTCTTCATGAACAGGTCAGGGATCCATAGGGCATAGAAGAGGTCTCGC 964988 Query 213864 GTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCG 213923 | |||| ||| || |||| ||| || ||| || ||||||||||| | || | Sbjct 964989 GCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGAAAGTCAAACACATCAAAG 965048 Query 213924 TGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCAC- 213979 ||||| ||||||| ||| ||||||||||| ||||| | | ||||| || |||||||| Sbjct 965049 TGCCATGGCTCCAAGTAAATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACA 965108 Query 213980 CAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTT 214039 ||| | || ||||| | | | ||| | || || || || || || | || || Sbjct 965109 TAGCGT-GCAGTGTTGTTGTACACTCTCAGCATCGGCACAAGACCATTTGAGTTACCATT 965167 Query 214040 GGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACC 214099 ||||| || || || || | | || | ||| | | | || || || || Sbjct 965168 TGTTCCAGCAATGTAACTTCCTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTCC 965227 Query 214100 GGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTC 214159 || | || ||||| | || || | ||| || || ||||| | |||||||| Sbjct 965228 TGCAGATTTAGAGATAAGAGCACATTGTTTCAGTGTGTCATAAATGCCATCAATGCTGTC 965287 Query 214160 ATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAA 214219 ||| | | | ||||| ||||||||| ||||||||||| ||| | ||| | |||||| Sbjct 965288 ATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTGTTAGTGCCTGCGTTGAA 965347 Query 214220 AAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGAC 214279 || ||||| |||||| | | |||| | ||| || || |||||||||| | | | Sbjct 965348 CAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGC 965407 Query 214280 TGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCT 214339 || || || |||||||| | ||| ||||| ||||||||||| || | Sbjct 965408 TGCATCTATATCAGAGTTGTGGATTCCGACAGCTACTCTCATGAGCATGTGCTGTGGGCG 965467 Query 214340 CTC 214342 ||| Sbjct 965468 CTC 965470 >seq20909 Length=259154 Score = 194 bits (214), Expect = 3e-44 Identities = 190/245 (78%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || | |||| |||||||| ||||||||| || ||||||||||||| Sbjct 26223 GCTGACAGCCACTGCTTACGTGCGTCAGGACCTTCTGTTTGAGCTGAGCCACCTGGTCCC 26282 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| || |||||||| |||||||| || ||||||||| || ||||| || ||||| | Sbjct 26283 GCAGCACTGACGCGGTGTTGGACAGCCCCGCGTTGTCACTTTTCAGCACTTTTACTTTTT 26342 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| || ||||| || || ||||| || || || || || || |||| |||| Sbjct 26343 CCTCCAGCCGGGCAATGCGCTCGAGCTTGCGTCGCCGACACTTAGTAGCAGCCAGTCGGT 26402 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACT 241628 ||| || ||||| | || || ||||| || |||||| ||||| ||||| || ||| Sbjct 26403 TCCTCAGCCTCTTCCTCTCGGCTTTGATCCGCTCCTGGGTCTCCAGATCGATGGGGGACA 26462 Query 241629 TGGGT 241633 | ||| Sbjct 26463 TTGGT 26467 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/115 (78%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| || |||||| |||||||||| || |||||||| |||||||| ||||||| Sbjct 26256 TCTGTTTGAGCTGAGCCACCTGGTCCCGCAGCACTGACGCGGTGTTGGACAGCCCCGCGT 26315 Query 238986 TATCAGACTTGAGCA--------TTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | ||| || |||| || ||||||||||| || ||||| || ||||| Sbjct 26316 TGTCACTTTTCAGCACTTTTACTTTTTCCTCCAGCCGGGCAATGCGCTCGAGCTT 26370 >seq24544 Length=696746 Score = 187 bits (206), Expect = 5e-42 Identities = 187/241 (78%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 241389 GCTGACAGCC--TTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTC 241446 |||||||||| | |||||||| || | || | |||||||||||||| ||||| || Sbjct 648242 GCTGACAGCCACTACTCACATGTGTCATA--ACTTTTTGTTTGAGTTGGGCTACCTGCTC 648185 Query 241447 CCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTT 241506 ||||| || || |||||||| |||||||| |||||||| | || || ||||| ||||| Sbjct 648184 GCGCAGCACAGAAGCGGTATTTGACAGTCCGGCGTTGTCCGTTTTCAGGACCTTAACTTT 648125 Query 241507 CTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCG 241566 || ||||| || || || ||||||||||| || | |||||||||| |||||||| | Sbjct 648124 TTCTTCCAGACGAGCAATACGTTCCAGTTTTCGTCTCCGGCATTTGGAGGCTGCCAGTCT 648065 Query 241567 GTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| || | ||| || || || |||||||| || |||| ||||| ||||| ||||| Sbjct 648064 GTTCCTCAGACGCTTGCGCTCGGCTTTGATGCGCTCTTGGTTCTCCAAATCGATGGGAGA 648005 Query 241627 C 241627 | Sbjct 648004 C 648004 >seq19395 Length=23913 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||||||||| || |||||||||||||||| || |||||||| | ||| Sbjct 3030 AGGACCTTCTGTTTGAGCTGCTCCACCTGGTCCCGCAGCACAGACGCGGTGGACGCCAGG 2971 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | ||| || ||||||||| ||||| || | | |||||| |||||| Sbjct 2970 TCCGTGTTCTGGGTCTTCAGGCTCTTCACTTTGTCCTCGAGTCTGGAGATGCGCTCCAGT 2911 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||| |||||||| |||| ||| || | |||||| || |||||||| | || |||||| Sbjct 2910 TTGCGGCGGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGTCTCTTCCTCTCGGCCTTG 2851 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 2850 ATGCGCTCCTGTGAGTCCATGTCGATGGGGGAC 2818 >seq3913 Length=546623 Score = 141 bits (156), Expect = 2e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 241402 GCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGC 241461 || || ||| | || ||||| ||||||||| || |||||||| || ||||| ||| ||| Sbjct 56770 GCTCACGTGACTCATGACCTTCTGTTTGAGCTGTGCCACCTGCTCGCGCAGGACGCTCGC 56711 Query 241462 GGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGC 241521 ||| | ||| | | ||| | | ||| || ||| ||||| ||||| ||||| | Sbjct 56710 GGTGGATGCCAGCTCAGTGTTTTGTGTCTTTAGTGTCTTTACTTTGTCCTCGAGCCGAGA 56651 Query 241522 GATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTT 241581 ||| || |||||||| || |||||| |||| ||| || | |||||| || || |||| Sbjct 56650 GATACGCTCCAGTTTACGTTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCTTCTT 56591 Query 241582 ACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || || ||||||||||| ||||||| |||||||| || || ||| Sbjct 56590 GCGCTCTGCCTTGATGCGCTCCTGGTTGTCCATGTCAATGGGCGAC 56545 >seq22773 Length=730387 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || ||||| |||||||| | ||||| ||| ||||| | ||| ||| Sbjct 299220 CTGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGCCTCAATGGA 299279 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| || || ||||| ||||| |||||||||||| || |||| ||||| || Sbjct 299280 CTCATTGTTGCCGAGGATCTGGGCAGTAGAGGCTGTGGGCATTGGGGCCAGGAGGAGGCT 299339 Query 213038 GTTCCTCACTCCGTGC 213053 ||||||||| || ||| Sbjct 299340 GTTCCTCACACCATGC 299355 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 |||||| || | ||||| ||||||||||||||| | ||||||||| || ||||| || Sbjct 300295 TGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGACTTGATGGTGCCTAGATTCTGCTG 300354 Query 213587 GTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||| ||| | ||| |||||||||||||| |||| || |||||| ||| Sbjct 300355 GTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTG 300414 Query 213647 GGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTG 213695 ||| || || |||| ||| || | | |||||| ||||| ||| || Sbjct 300415 TGAC-TCAATA-ATGGCATACCACAGCTGCTGGGCCTTCACCACACGCTTG 300463 >seq20084 Length=15297 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| |||||||| || |||||||||| || || ||||| | || | | || Sbjct 12703 TCGTCGCGGCTGATAAGTTCGTTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCTTC 12762 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||| || ||||| || |||||||||||||| |||||||| || || || || Sbjct 12763 AGCCAGAAAATGGCGGCGAACGATCCAGAGAAGAAGATCCCCTCCACAGCAGCAAAGGC 12821 >seq20831 Length=293931 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 38960 CACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGT 39019 ||| || ||||| |||||||| |||||||||||||| || | |||||| |||| | | Sbjct 285106 CACTAGTTCCCATCTGTTGGCAGAGAAGAGCAGGTGCACGGTGTGGTCCTCCAAATTGCT 285165 Query 39020 CTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGGGGAAC 39077 || |||| ||||| | || |||| || ||| ||||| ||||| ||||| || ||| Sbjct 285166 TTTCTTCTCTAGGTAGGCACTAATCAACTGTCCAATGGTGGTGGTCCTGTCTGGAAAC 285223 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 39070 CGGGGAACCTCATCAGCTCGGCCGGTCTCCCGCTACCTTGCAGAGCCTCCACCAGCTTTT 39129 |||| |||||||||| ||||||||| | || || | ||| |||| ||| ||||| | Sbjct 287034 CGGGAAACCTCATCATCTCGGCCGGGCGTCCACTCATCTCCAGCGCCTGCACAAGCTTCT 287093 Query 39130 GACACTGTGTGGTCTTTCCAGCCCTGTCCACTCCTTCCAATACCACAAGAGCTCCCCTCT 39189 |||||| |||||||| || || ||||||||||||||| || | || ||||| || | Sbjct 287094 TACACTGCGTGGTCTTCCCCGCTTTGTCCACTCCTTCCAGGACTATGAGCGCTCCTCTTT 287153 Query 39190 T 39190 | Sbjct 287154 T 287154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931229353190400